GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

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Abstract

Genome-wide, cell-type-specific profiles are being systematically generated for numerous genomic and epigenomic features. There is, however, no universally applicable analytical methodology for such data. We present GSuite HyperBrowser, the first comprehensive solution for integrative analysis of dataset collections across the genome and epigenome. The GSuite HyperBrowser is an open-source system for streamlined acquisition and customizable statistical analysis of large collections of genome-wide datasets. The system is based on new computational and statistical methodologies that permit comparative and confirmatory analyses across multiple disparate data sources. Expert guidance and reproducibility are facilitated via a Galaxy-based web-interface. The software is available at https://hyperbrowser.uio.no/gsuite

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  1. Now published in GigaScience doi: 10.1093/gigascience/gix032

    A version of this preprint has been published in the Open Access journal GigaScience (see paper https://doi.org/10.1093/gigascience/gix032 ), where the paper and peer reviews are published openly under a CC-BY 4.0 license.

    These peer reviews were as follows:

    Reviewer 1: http://dx.doi.org/10.5524/REVIEW.100681 Reviewer 2: http://dx.doi.org/10.5524/REVIEW.100682 Reviewer 3: http://dx.doi.org/10.5524/REVIEW.100719