Evaluated articles

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Expression-Driven Genetic Dependency Reveals Targets for Precision Medicine

This article has 9 authors:
1. Abdulkadir Elmas
2. Hillary M. Layden
3. Jacob D. Ellis
4. Luke N. Bartlett
5. Xian Zhao
6. Reika Kawabata-Iwakawa
7. Hideru Obinata
8. Scott W. Hiebert
9. Kuan-lin Huang
Reviewed by GigaScience

This article has 4 evaluationsAppears in 1 listLatest version Oct 21, 2024Latest activity Jan 30, 2026
Federated Knowledge Retrieval Elevates Large Language Model Performance on Biomedical Benchmarks

This article has 2 authors:
1. Janet Joy
2. Andrew I. Su
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Aug 2, 2025Latest activity Jan 29, 2026
SpaceBF: Spatial coexpression analysis using Bayesian Fused approaches in spatial omics datasets

This article has 2 authors:
1. Souvik Seal
2. Brian Neelon
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Apr 3, 2025Latest activity Jan 29, 2026
nf-core/proteinfamilies: A scalable pipeline for the generation of protein families

This article has 13 authors:
1. Evangelos Karatzas
2. Martin Beracochea
3. Fotis A. Baltoumas
4. Eleni Aplakidou
5. Lorna Richardson
6. James A. Fellows Yates
7. Daniel Lundin
8. nf-core community
9. Aydin Buluç
10. Nikos C. Kyrpides
11. Ilias Georgakopoulos-Soares
12. Georgios A. Pavlopoulos
13. Robert D. Finn
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Aug 16, 2025Latest activity Jan 29, 2026
Comparative evaluation of computational methods for reconstruction of human viral genomes

This article has 7 authors:
1. Maria J. P. Sousa
2. Mari Toppinen
3. Lari Pyöriä
4. Klaus Hedman
5. Antti Sajantila
6. Maria F. Perdomo
7. Diogo Pratas
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Jan 22, 2025Latest activity Jan 5, 2026
Haplotype-resolved chromosome-level genome assemblies of four Diamesa species reveal the genetic basis of cold tolerance and high-altitude adaptations in arctic chironomids

This article has 12 authors:
1. Sarah L.F. Martin
2. Renato La Torre
3. Bram Danneels
4. Ave Tooming-Klunderud
5. Morten Skage
6. Spyridon Kollias
7. Ole Kristian Tørresen
8. Mohsen Falahati Anbaran
9. Elisabeth Stur
10. Kjetill S. Jakobsen
11. Michael D. Martin
12. Torbjørn Ekrem
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Aug 1, 2025Latest activity Jan 5, 2026
Open RGB Imaging Workflow for Morphological and Morphometric Analysis of Fruits using AI: A Case Study on Almonds

This article has 4 authors:
1. Mas-Gómez Jorge
2. Rubio Manuel
3. Dicenta Federico
4. Martínez-García Pedro José
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version May 6, 2025Latest activity Jan 5, 2026
A sulfatide-centered ultra-high resolution magnetic resonance MALDI imaging benchmark dataset for MS1-based lipid annotation tools

This article has 4 authors:
1. Lars Gruber
2. Stefan Schmidt
3. Thomas Enzlein
4. Carsten Hopf
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Oct 20, 2025Latest activity Jan 5, 2026
An Integrative Multi-Omics Random Forest Framework for Robust Biomarker Discovery

This article has 5 authors:
1. Wei Zhang
2. Hanchen Huang
3. Lily Wang
4. Brian D. Lehmann
5. Steven X. Chen
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Mar 6, 2025Latest activity Jan 5, 2026
The Good, the Bad, and the Ugly: Segmentation-Based Quality Control of Structural Magnetic Resonance Images

This article has 5 authors:
1. Robert Dahnke
2. Polona Kalc
3. Gabriel Ziegler
4. Julian Grosskreutz
5. Christian Gaser
Reviewed by GigaScience

This article has 4 evaluationsAppears in 1 listLatest version Mar 1, 2025Latest activity Jan 5, 2026
pyRootHair: Machine Learning Accelerated Software for High-Throughput Phenotyping of Plant Root Hair Traits

This article has 6 authors:
1. Ian Tsang
2. Lawrence Percival-Alwyn
3. Stephen Rawsthorne
4. James Cockram
5. Fiona Leigh
6. Jonathan A. Atkinson
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jul 18, 2025Latest activity Nov 28, 2025
RNA-SeqEZPZ: A Point-and-Click Pipeline for Comprehensive Transcriptomics Analysis with Interactive Visualizations

This article has 4 authors:
1. Cenny Taslim
2. Yuan Zhang
3. Genevieve C. Kendall
4. Emily R. Theisen
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Dec 23, 2024Latest activity Nov 28, 2025
EssSubgraph improves performance and generalizability of mammalian essential gene prediction with large networks

This article has 6 authors:
1. Haimei Wen
2. Susan Carpenter
3. Karen McGinnis
4. Andrew Nelson
5. Keriayn Smith
6. Tian Hong
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jul 25, 2025Latest activity Oct 30, 2025
Ultra-deep long-read metagenomics captures diverse taxonomic and biosynthetic potential of soil microbes

This article has 6 authors:
1. Caner Bağcı
2. Timo Negri
3. Elena Buena Atienza
4. Caspar Gross
5. Stephan Ossowski
6. Nadine Ziemert
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version May 28, 2025Latest activity Oct 30, 2025
TinkerHap - A Novel Read-Based Phasing Algorithm with Integrated Multi-Method Support for Enhanced Accuracy

This article has 5 authors:
1. Uri Hartmann
2. Eran Shaham
3. Dafna Nathan
4. Ilana Blech
5. Danny Zeevi
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Feb 20, 2025Latest activity Oct 30, 2025
GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction

This article has 3 authors:
1. Baohua Chen
2. Dongya Wu
3. Guojie Zhang
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Aug 12, 2025Latest activity Oct 30, 2025
On the path to reference genomes for all biodiversity: lessons learned and laboratory protocols created in the Sanger Tree of Life core laboratory over the first 2000 species

This article has 18 authors:
1. Caroline Howard
2. Amy Denton
3. Benjamin Jackson
4. Adam Bates
5. Jessie Jay
6. Halyna Yatsenko
7. Priyanka Sethu Raman
8. Abitha Thomas
9. Graeme Oatley
10. Raquel Vionette do Amaral
11. Zeynep Ene Göktan
12. Juan Pablo Narváez Gómez
13. Isabelle Clayton Lucey
14. Elizabeth Sinclair
15. Michael A. Quail
16. Mark Blaxter
17. Kerstin Howe
18. Mara K. N. Lawniczak
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Apr 11, 2025Latest activity Oct 30, 2025
Improving the Reliability and Quality of Nextflow Pipelines with nf-test

This article has 2 authors:
1. Lukas Forer
2. Sebastian Schoenherr
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version May 30, 2024Latest activity Oct 30, 2025
CryoDataBot: a pipeline to curate cryoEM datasets for AI-driven structural biology

This article has 8 authors:
1. Qibo Xu
2. Leon Wu
3. Michael Rebelo
4. Shi Feng
5. Xinye Yu
6. Farhanaz Farheen
7. Daisuke Kihara
8. Z. Hong Zhou
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Sep 10, 2025Latest activity Oct 30, 2025
The enduring advantages of the SLOW5 file format for raw nanopore sequencing data

This article has 5 authors:
1. Hasindu Gamaarachchi
2. Sasha Jenner
3. Hiruna Samarakoon
4. James M. Ferguson
5. Ira W. Deveson
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jul 4, 2025Latest activity Oct 30, 2025