Showing page 28 of 423 pages of list content

  1. Loss of the s2U tRNA modification induces antibiotic tolerance and is linked to changes in ribosomal protein expression

    This article has 5 authors:
    1. Katherine L Cotten
    2. Abigail McShane
    3. Peter C Dedon
    4. Thomas J Begley
    5. Kimberly M Davis
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    • Curated by eLife

      eLife Assessment

      This fundamental work examines how tRNA modifications influence antibiotic tolerance, providing novel insights that may have therapeutic uses. The evidence supporting the conclusions is convincing. Strengths of the manuscript include the mechanism of tRNA modification influencing antibiotic tolerance and the precise measurement techniques used throughout. Further analysis of growth rate impacts and specific identification of the proteins responsible for the effect would further strengthen the manuscript.

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    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
  2. The Fd4 transcription factor translates transient spatial cues in progenitors into long-term lineage identity

    This article has 2 authors:
    1. Sen-Lin Lai
    2. Chris Q Doe
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    • Curated by eLife

      eLife Assessment

      This important study focuses on the molecular mechanisms underlying the generation of neuronal diversity. Taking advantage of a well-defined neuroblast lineage in Drosophila, the authors provide convincing evidence that two transcription factors of the conserved forkhead box (FOX) family offer a mechanistic link between transient spatial cues that specify neuroblast identity and terminal selector genes that define post-mitotic neuron identity. The findings will be of interest to developmental neurobiologists.

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    This article has 9 evaluationsAppears in 1 listLatest version Latest activity
  3. Continuous flash suppression of neural responses and population orientation coding in macaque V1

    This article has 5 authors:
    1. Cai-Xia Chen
    2. Xin Wang
    3. Dan-Qing Jiang
    4. Shi-Ming Tang
    5. Cong Yu
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    • Curated by eLife

      eLife Assessment

      This important study shows that orientation tuning of V1 neurons is suppressed during a continuous flash suppression paradigm, especially in neurons with binocular receptive fields. These findings, made using cutting-edge imaging techniques, convincingly implicate early visual processing in continuous flash suppression, in agreement with previous studies suggesting reduced effective contrast of such stimuli in V1.

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    This article has 15 evaluationsAppears in 1 listLatest version Latest activity
  4. In-situ glial cell-surface proteomics identifies pro-longevity factors in Drosophila

    This article has 22 authors:
    1. Madeline P Marques
    2. Bo Sun
    3. Ye-Jin Park
    4. Tyler Jackson
    5. Tzu-Chiao Lu
    6. Yanyan Qi
    7. Erin Harrison
    8. Miranda C Wang
    9. Omar Moussa Pasha
    10. Amogh Varanasi
    11. Dominique Kiki Carey
    12. DR Mani
    13. Jonathan Zirin
    14. Mujeeb Qadiri
    15. Yanhui Hu
    16. Kartik Venkatachalam
    17. Norbert Perrimon
    18. Steven A Carr
    19. Namrata D Udeshi
    20. Liqun Luo
    21. Jiefu Li
    22. Hongjie Li
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      Combining state-of-art in-situ cell-surface proteomics, functional genetic screening, and single-nucleus RNA sequencing, this fundamental work substantially advances our understanding of glial contributions to organismal lifespan. The evidence supporting the conclusions is compelling. The work will be of broad interest to researchers studying aging biology, glia-neuron communication and in vivo proteomic profiling.

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    This article has 6 evaluationsAppears in 1 listLatest version Latest activity
  5. Characterisation of cold-selective lamina I spinal projection neurons in the mouse

    This article has 12 authors:
    1. Aimi N Razlan
    2. Wenhui Ma
    3. Allen C Dickie
    4. Erika Polgar
    5. Anna G McFarlane
    6. Mansi Yadav
    7. Andrew H Cooper
    8. Douglas Strathdee
    9. Masahiko Watanabe
    10. Andrew M Bell
    11. Andrew J Todd
    12. Junichi Hachisuka
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      eLife Assessment

      This important study offers insights into the anatomical and physiological features of cold-selective lamina I spinal projection neurons. The evidence supporting the authors' claims is convincing, although including a larger sample size and more quantification would have strengthened the study, and the claims of monosynaptic connectivity would benefit from further experimental evidence. The work will interest those in the field of somatosensory biology, especially researchers studying spinal cord dorsal horn circuits and projection neuron cell types

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    This article has 23 evaluationsAppears in 1 listLatest version Latest activity
  6. How Occam’s razor guides human decision-making

    This article has 5 authors:
    1. Eugenio Piasini
    2. Shuze Liu
    3. Pratik Chaudhari
    4. Vijay Balasubramanian
    5. Joshua I Gold
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    • Curated by eLife

      eLife Assessment

      This study presents an important new approach to quantifying parsimony preferences in human inference. The work provides convincing evidence that humans are sensitive to specific formalizations of parsimony, such as the dimensionality of perceptual shapes. The work is considered timely, well-written, and technically sophisticated, effectively bridging concepts from statistical inference and human decision-making.

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    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
  7. EEG decodability of facial expressions and their stereoscopic depth cues in immersive virtual reality

    This article has 7 authors:
    1. Felix Klotzsche
    2. Ammara Nasim
    3. Simon M Hofmann
    4. Arno Villringer
    5. Vadim Nikulin
    6. Werner Sommer
    7. Michael Gaebler
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    • Curated by eLife

      eLife Assessment

      This valuable study successfully decoded visual representations of facial expressions and stereoscopic depth information from electroencephalogram (EEG) signals recorded in an immersive virtual reality (VR) environment. The evidence is solid in demonstrating the technical feasibility of integrating state-of-the-art EEG decoding and VR with eye tracking. This work will interest neuroscience researchers, as well as engineers developing brain-machine interfaces and/or virtual reality displays.

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    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
  8. Persistent contacts between Climp63 and microtubules cause mitotic defects and nuclear fragmentation

    This article has 2 authors:
    1. Jelmi uit de Bos
    2. Ulrike Kutay
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    • Curated by eLife

      eLife Assessment

      This important study reveals that mitotic release of an ER-microtubule tether is critical for normal mitotic progression. Manipulating CLIMP63 phosphorylation, the authors provide convincing evidence that persistent microtubule-ER contacts activate the spindle assembly checkpoint and, if mitosis is forced to proceed, drive severe micronucleation. While the study provides new mechanistic insights, some evidence is indirect, and additional experiments would further refine the model.

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    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  9. Frequency-dependent modulation of foveal contrast sensitivity by fine-scale exogenously triggered attention

    This article has 3 authors:
    1. Yue Guzhang
    2. T Florian Jaeger
    3. Martina Poletti
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This study explores how exogenous attention operates at the finest spatial scale of vision, within the foveola - a topic that has not been previously explored but is of interest to visual neuroscientists. The question is important for understanding how attention shapes perception, and how it differs between the periphery and the central regions of highest visual acuity. The evidence indicating that attention near the fovea preferentially enhances low spatial frequencies is compelling, as shown by carefully designed experiments with state-of-the-art eye tracking to monitor attended locations just a few tens of minutes of arc away from the fixation target.

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    This article has 9 evaluationsAppears in 1 listLatest version Latest activity
  10. Learning-Associated Flexibility of Cortical Taste Coding Is Impaired in Shank3 Knockout Mice

    This article has 2 authors:
    1. Chi-Hong Wu
    2. Gina G Turrigiano
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    • Curated by eLife

      eLife Assessment

      This valuable study provides solid evidence for deficits in aversive taste learning and taste coding in a mouse model of autism spectrum disorders. Specifically, the authors found that Shank3 knockout mice exhibit behavioral deficits in learning and extinction of conditioned taste aversion, and calcium imaging of the gustatory cortex identified impaired neuronal responses to taste stimuli. This paper will likely be of interest to researchers studying how learning and sensory processes are affected by genetic causes of autism spectrum disorders.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  11. Robust and replicable effects of ageing on resting state brain electrophysiology measured with MEG

    This article has 7 authors:
    1. Andrew J Quinn
    2. Jemma Pitt
    3. Oliver Kohl
    4. Chetan Gohil
    5. Mats WJ van Es
    6. Anna C Nobre
    7. Mark W Woolrich
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      The authors ask whether a simple whole-head spectral power analysis of human magnetoencephalography data recorded at rest in a large cohort of adults shows robust effects of age, and their results provide compelling evidence that it does. The relative simplicity of the analysis is a major strength of the paper, and the authors are careful to control for many different confounds - although perhaps highly correlated factors like brain anatomy still pose a slight issue. The paper provides a valuable power analysis framework that should inform researchers across the broader neuroimaging community

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    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  12. Thymic selection of the T cell receptor repertoire is biased toward autoimmunity in females

    This article has 18 authors:
    1. Hélène Vantomme
    2. Valentin Quiniou
    3. Leslie Adda
    4. Charline Jouannet
    5. Vanessa Mhanna
    6. Céline Albalaa
    7. Pierre Barennes
    8. Nicolas Coatnoan
    9. Vimala Diderot
    10. Johanna Dubois
    11. Gwladys Fourcade
    12. Kenz Le Gouge
    13. Otriv Frédéric Nguekap Tchoumba
    14. Martin Pezous
    15. Paul Stys
    16. Adrien Six
    17. Encarnita Mariotti-Ferrandiz
    18. David Klatzmann
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This study provides valuable insights into addressing the question of whether the prevalence of autoimmune disease could be driven by sex differences in the T cell receptor (TCR) repertoire, correlating with higher rates of autoimmune disease in females. The authors compared male and female TCR repertoires using bulk RNA sequencing, from sorted thymocyte subpopulations in pediatric and adult human thymuses; however, the analyses provided do not provide sufficient discrimination, as paired TCR chains are not examined, and incompletely support the central claims regarding sex differences in the TCR repertoire and potential autoimmune bias.

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    This article has 10 evaluationsAppears in 1 listLatest version Latest activity
  13. Cardenolide toxin diversity impacts monarch butterfly growth and sequestration

    This article has 3 authors:
    1. Anurag A Agrawal
    2. Amy P Hastings
    3. Paola Rubiano-Buitrago
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    • Curated by eLife

      eLife Assessment

      This important study investigates how structurally diverse cardenolide toxins in tropical milkweed, especially mixtures containing nitrogen- and sulfur-containing variants, influence monarch caterpillar feeding, growth, and toxin sequestration. The experiments provide solid evidence that chemical diversity within a single group of plant toxins can have combined effects on even highly specialized herbivores that differ from the effects of each toxin alone. However, as the mixture design does not fully separate true diversity effects from the influence of the N,S-cardenolides themselves and the ecological basis for the chosen natural ratios remains weakly justified. As a result, the broader conclusions would require more fully justified concentration regimes, mixture treatments that exclude N,S-cardenolides, and tests on living plants and non-adapted herbivores to firmly support the proposed coevolutionary interpretation.

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    This article has 8 evaluationsAppears in 1 listLatest version Latest activity
  14. Atovaquone/Proguanil Use and Zoster Vaccination Are Associated with Reduced Alzheimer’s Disease Risk in Two Cohorts: Implications for a Latent Toxoplasma gondii Mechanism

    This article has 7 authors:
    1. Ariel Israel
    2. Abraham Weizman
    3. Sarah Israel
    4. Shai Ashkenazi
    5. Shlomo Vinker
    6. Eli Magen
    7. Eugene Merzon
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This useful study raises interesting questions but provides inadequate evidence of an association between atovaquone-proguanil use (as well as toxoplasmosis seropositivity) and reduced Alzheimer's dementia risk. The findings are intriguing but they are correlative and hypothesis-generating with the strong possibility of residual confounding.

      [Note: The final version has been published in Brain, Behavior, and Immunity: https://doi.org/10.1016/j.bbi.2026.106473]

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  15. Serratia marcescens Outer Membrane Vesicles rapidly paralyze Drosophila melanogaster through triggering apoptosis in the nervous system

    This article has 11 authors:
    1. Bechara Sina Rahme
    2. Roberto E Bruna
    3. Marion Draheim
    4. Chuping Cai
    5. Maria Victoria Molino
    6. Yaotang Wu
    7. Miriam Wennida Yamba
    8. Gisela Di Venanzio
    9. Matthieu Lestradet
    10. Eleonora García Véscovi
    11. Dominique Ferrandon
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This study offers important insights into how outer membrane vesicles (OMVs) secreted by Serratia marcescens, which carry various virulence factors, contribute to pathogenicity. The experiments provide solid preliminary support for OMV-mediated pathogenic effects, with a critical role for the metalloprotease virulence factor PrtA. However, the evidence remains incomplete, and the current level of validation limits confidence in the strength of the conclusions.

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    This article has 5 evaluationsAppears in 1 listLatest version Latest activity
  16. Multimodal single-cell analyses reveal distinct fusion-regulated transcriptional programs in Ewing sarcoma

    This article has 14 authors:
    1. Olivia G Waltner
    2. April A Apfelbaum
    3. Emma D Wrenn
    4. Shruti S Bhise
    5. Sami B Kanaan
    6. Rula Green Gladden
    7. Mark A Mendoza
    8. Roger Volden
    9. Zev Kronenberg
    10. Anand Patel
    11. Michael Dyer
    12. Jay F Sarthy
    13. Elizabeth R Lawlor
    14. Scott N Furlan
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    • Curated by eLife

      eLife Assessment

      This valuable study presents an analysis of the gene regulatory networks that contribute to tumour heterogeneity and tumor plasticity in Ewing sarcoma, with key implications for other fusion-driven sarcomas. The authors convincingly employed orthogonal approaches, including single-cell sequencing and xenografts, to reveal the existence and plasticity of specific gene regulatory networks (e.g., TGF-beta signaling) within Ewing sarcoma, as well as significant differences that exist between cell lines and patient tumors.

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    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  17. Microsaccades track shifting but not necessarily maintaining covert visual-spatial attention

    This article has 2 authors:
    1. Anna M van Harmelen
    2. Freek van Ede
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    • Curated by eLife

      eLife Assessment

      This useful study demonstrates that microsaccade direction primarily indexes shifts rather than the maintenance of covert spatial attention, offering a focused interpretation that may help reconcile inconsistencies in the prior literature. However, the evidence remains incomplete due to limited engagement with the broader body of existing work and the absence of independent measures, single-trial analyses, and neutral-condition controls needed to substantiate the central claims. The work will be of broad interest to researchers investigating attention, eye movements, and visuomotor mechanisms.

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    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  18. Hepatic Transthyretin knockdown alleviates NAFLD by enhancing SERCA2 function and inhibiting endoplasmic reticulum stress

    This article has 7 authors:
    1. Yingzi He
    2. Tian Yang
    3. Ruojun Qiu
    4. Bingyang Liu
    5. Shuo Wang
    6. Jianan Wang
    7. Fenping Zheng
    This article has been curated by 1 group:
    • Curated by eLife

      eLife Assessment

      This potentially important study examines the consequences of manipulating the expression of thyroxine-binding and amyloidogenic hepatocyte secretory protein transthyretin (TTR). Solid in vivo evidence from two dietary models supports that TTR production exacerbates liver injury, whereas the evidence for a link between TTR production, uptake, and calcium dysregulation is incomplete. If the findings are confirmed, they would provide evidence for a novel cell biological pathway of liver injury.

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    This article has 2 evaluationsAppears in 1 listLatest version Latest activity
  19. Cholinergic blockade reveals a role for human hippocampal theta in memory encoding but not retrieval

    This article has 6 authors:
    1. Tamara Gedankien
    2. Jennifer Kriegel
    3. Erfan Zabeh
    4. David McDonagh
    5. Bradley Lega
    6. Joshua Jacobs
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    • Curated by eLife

      eLife Assessment

      This fundamental work advances our understanding of the role of human hippocampal theta oscillations in memory encoding and retrieval. The evidence supporting the conclusions is convincing, using both scopolamine administration and intracranial EEG recordings. This work will be of broad interest to neuroscientists and has translational implications.

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    This article has 8 evaluationsAppears in 1 listLatest version Latest activity
  20. Stranded short nascent strand sequencing reveals the topology of DNA replication origins in Trypanosoma brucei

    This article has 6 authors:
    1. Slavica Stanojcic
    2. Bridlin Barckmann
    3. Pieter Monsieurs
    4. Lucien Crobu
    5. Simon George
    6. Yvon Sterkers
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    • Curated by eLife

      eLife Assessment

      The authors adapt sequencing of nascent DNA (DNA linked to an RNA primer, "SNS-Seq") to map DNA replication origins in Trypanosoma brucei. The main impact of this work is reporting a new set of putative origins, which do not overlap with previously reported origins, but which appear to overlap with previously mapped DNA-RNA hybrid (R-loops). Thus, these valuable findings open up new avenues for further investigation into the mechanistic basis for firing of replication forks in this organism. However, the supporting evidence remains incomplete and would benefit from orthogonal validation. This work will be of interest to those studying DNA replication and epigenetic regulation of fork origins.

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    This article has 8 evaluationsAppears in 1 listLatest version Latest activity