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Global diversity and antimicrobial resistance of typhoid fever pathogens: insights from 13,000 Salmonella Typhi genomes

1. Megan E. Carey
2. Zoe A. Dyson
3. Danielle J. Ingle
4. Afreenish Amir
5. Mabel K. Aworh
6. Marie Anne Chattaway
7. Ka Lip Chew
8. John A. Crump
9. Nicholas A. Feasey
10. Benjamin P. Howden
11. Karen H. Keddy
12. Mailis Maes
13. Christopher M. Parry
14. Sandra Van Puyvelde
15. Hattie E. Webb
16. Ayorinde O. Afolayan
17. Shalini Anandan
18. Jason R. Andrews
19. Philip M. Ashton
20. Buddha Basnyat
21. Ashish Bavdekar
22. Isaac I. Bogoch
23. John D. Clemens
24. Kesia E. da Silva
25. Anuradha De
26. Joep de Ligt
27. Paula Lucia Diaz Guevara
28. Christiane Dolecek
29. Shanta Dutta
30. Louise Francois Watkins
31. Denise O. Garrett
32. Gauri Godbole
33. Melita A. Gordon
34. Andrew R. Greenhill
35. Chelsey Griffin
36. Madhu Gupta
37. Rene Hendricksen
38. Robert S. Heyderman
39. Yogesh Hooda
40. Juan Carlos Hormazabal
41. Odion O. Ikhimiukor
42. Junaid Iqbal
43. Jobin J. Jacob
44. Claire Jenkins
45. Dasaratha Ramaiah Jinka
46. Jacob John
47. Gagandeep Kang
48. Abdoulie Kanteh
49. Arti Kapil
50. Abhilasha Karkey
51. Samuel Kariuki
52. Robert A. Kingsley
53. Roshine Mary Koshy
54. A. C. Lauer
55. Myron M. Levine
56. Ravikumar Kadahalli Lingegowda
57. Stephen P. Luby
58. Grant A. Mackenzie
59. Tapfumanei A. Mashe
60. Chisomo Msefula
61. Ankur Mutreja
62. Geetha Nagaraj
63. Savitha Nagaraj
64. Satheesh Nair
65. Take K. Naseri
66. Susana Nimarota-Brown
67. Elisabeth Njamkepo
68. Iruka N. Okeke
69. Sulochana Putli Bai Perumal
70. Andrew J. Pollard
71. Agila Kumari Pragasam
72. Firdausi Qadri
73. Farah N. Qamar
74. Sadia Isfat Ara Rahman
75. Savitra D. Rambocus
76. David A. Rasko
77. Pallab Ray
78. Roy Robins-Browne
79. Temsunaro Rongsen-Chandola
80. Jean Pierre Rutanga
81. Samir K. Saha
82. Senjuti Saha
83. Karnika Saigal
84. Mohammad Saiful Islam Sajib
85. Jessica C. Seidman
86. Jivan Shakya
87. Varun Shamanna
88. Jayanthi Shastri
89. Rajeev Shrestha
90. Sonia Sia
91. Michael J. Sikorski
92. Ashita Singh
93. Anthony M. Smith
94. Kaitlin A. Tagg
95. Dipesh Tamrakar
96. Arif Mohammad Tanmoy
97. Maria Thomas
98. Mathew S. Thomas
99. Robert Thomsen
100. Nicholas R. Thomson
101. Siaosi Tupua
102. Krista Vaidya
103. Mary Valcanis
104. Balaji Veeraraghavan
105. François-Xavier Weill
106. Jackie Wright
107. Gordon Dougan
108. Silvia Argimón
109. Jacqueline A. Keane
110. David M. Aanensen
111. Stephen Baker
112. Kathryn E. Holt
113. Global Typhoid Genomics Consortium Group Authorship

• Curated by eLife

  eLife assessment

  Although largely descriptive, this meta-analysis of 13,000 published Typhi genomes is hugely important to public health. The dataset and presented analysis represents the first wholesale analysis of all available Typhi genomes from the last 21 years. The findings are of great significance to tracking the emergence and maintenance of AMR in Typhi and include novel insights into XDR strain emergence in Pakistan as well as the relationship between MDR maintenance and chromosomal integration.

Reviewed by eLife