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Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes

1. Megan E Carey
2. Zoe A Dyson
3. Danielle J Ingle
4. Afreenish Amir
5. Mabel K Aworh
6. Marie Anne Chattaway
7. Ka Lip Chew
8. John A Crump
9. Nicholas A Feasey
10. Benjamin P Howden
11. Karen H Keddy
12. Mailis Maes
13. Christopher M Parry
14. Sandra Van Puyvelde
15. Hattie E Webb
16. Ayorinde Oluwatobiloba Afolayan
17. Anna P Alexander
18. Shalini Anandan
19. Jason R Andrews
20. Philip M Ashton
21. Buddha Basnyat
22. Ashish Bavdekar
23. Isaac I Bogoch
24. John D Clemens
25. Kesia Esther da Silva
26. Anuradha De
27. Joep de Ligt
28. Paula Lucia Diaz Guevara
29. Christiane Dolecek
30. Shanta Dutta
31. Marthie M Ehlers
32. Louise Francois Watkins
33. Denise O Garrett
34. Gauri Godbole
35. Melita A Gordon
36. Andrew R Greenhill
37. Chelsey Griffin
38. Madhu Gupta
39. Rene S Hendriksen
40. Robert S Heyderman
41. Yogesh Hooda
42. Juan Carlos Hormazabal
43. Odion O Ikhimiukor
44. Junaid Iqbal
45. Jobin John Jacob
46. Claire Jenkins
47. Dasaratha Ramaiah Jinka
48. Jacob John
49. Gagandeep Kang
50. Abdoulie Kanteh
51. Arti Kapil
52. Abhilasha Karkey
53. Samuel Kariuki
54. Robert A Kingsley
55. Roshine Mary Koshy
56. AC Lauer
57. Myron M Levine
58. Ravikumar Kadahalli Lingegowda
59. Stephen P Luby
60. Grant Austin Mackenzie
61. Tapfumanei Mashe
62. Chisomo Msefula
63. Ankur Mutreja
64. Geetha Nagaraj
65. Savitha Nagaraj
66. Satheesh Nair
67. Take K Naseri
68. Susana Nimarota-Brown
69. Elisabeth Njamkepo
70. Iruka N Okeke
71. Sulochana Putli Bai Perumal
72. Andrew J Pollard
73. Agila Kumari Pragasam
74. Firdausi Qadri
75. Farah N Qamar
76. Sadia Isfat Ara Rahman
77. Savitra Devi Rambocus
78. David A Rasko
79. Pallab Ray
80. Roy Robins-Browne
81. Temsunaro Rongsen-Chandola
82. Jean Pierre Rutanga
83. Samir K Saha
84. Senjuti Saha
85. Karnika Saigal
86. Mohammad Saiful Islam Sajib
87. Jessica C Seidman
88. Jivan Shakya
89. Varun Shamanna
90. Jayanthi Shastri
91. Rajeev Shrestha
92. Sonia Sia
93. Michael J Sikorski
94. Ashita Singh
95. Anthony M Smith
96. Kaitlin A Tagg
97. Dipesh Tamrakar
98. Arif Mohammed Tanmoy
99. Maria Thomas
100. Mathew S Thomas
101. Robert Thomsen
102. Nicholas R Thomson
103. Siaosi Tupua
104. Krista Vaidya
105. Mary Valcanis
106. Balaji Veeraraghavan
107. François-Xavier Weill
108. Jackie Wright
109. Gordon Dougan
110. Silvia Argimón
111. Jacqueline A Keane
112. David M Aanensen
113. Stephen Baker
114. Kathryn E Holt
115. Global Typhoid Genomics Consortium Group Authorship

• Curated by eLife

  eLife assessment

  Although largely descriptive, this meta-analysis of 13,000 published Typhi genomes is hugely important to public health. The dataset and presented analysis represents the first wholesale analysis of all available Typhi genomes from the last 21 years. The findings are of great significance to tracking the emergence and maintenance of AMR in Typhi and include novel insights into XDR strain emergence in Pakistan as well as the relationship between MDR maintenance and chromosomal integration.

Reviewed by eLife