Evaluated articles

Showing page 3 of 19 pages of list content

When do longer reads matter? A benchmark of long read de novo assembly tools for eukaryotic genomes

This article has 7 authors:
1. Bianca-Maria Cosma
2. Ramin Shirali Hossein Zade
3. Erin Noel Jordan
4. Paul van Lent
5. Chengyao Peng
6. Stephanie Pillay
7. Thomas Abeel
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Feb 2, 2023Latest activity Jan 2, 2024
SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis

This article has 10 authors:
1. Akshay Akshay
2. Mitali Katoch
3. Masoud Abedi
4. Mustafa Besic
5. Navid Shekarchizadeh
6. Fiona C. Burkhard
7. Alex Bigger-Allen
8. Rosalyn M. Adam
9. Katia Monastyrskaya
10. Ali Hashemi Gheinani
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jun 28, 2023Latest activity Nov 13, 2023
cellsnake: a user-friendly tool for single-cell RNA sequencing analysis

This article has 7 authors:
1. Sinan U. Umu
2. Karoline Rapp Vander-Elst
3. Victoria T. Karlsen
4. Manto Chouliara
5. Espen Sønderaal Bækkevold
6. Frode Lars Jahnsen
7. Diana Domanska
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Aug 26, 2023Latest activity Nov 13, 2023
Developing best practices for genotyping-by-sequencing analysis in the construction of linkage maps

This article has 12 authors:
1. Cristiane Hayumi Taniguti
2. Lucas Mitsuo Taniguti
3. Rodrigo Rampazo Amadeu
4. Jeekin Lau
5. Gabriel de Siqueira Gesteira
6. Thiago de Paula Oliveira
7. Getulio Caixeta Ferreira
8. Guilherme da Silva Pereira
9. David Byrne
10. Marcelo Mollinari
11. Oscar Riera-Lizarazu
12. Antonio Augusto Franco Garcia
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Oct 6, 2023Latest activity Nov 13, 2023
Computational prediction of human deep intronic variation

This article has 4 authors:
1. Pedro Barbosa
2. Rosina Savisaar
3. Maria Carmo-Fonseca
4. Alcides Fonseca
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Feb 17, 2023Latest activity Nov 13, 2023
Single-cell transcriptome analysis illuminating the characteristics of species-specific innate immune responses against viral infections

This article has 7 authors:
1. Hirofumi Aso
2. Jumpei Ito
3. Haruka Ozaki
4. Yukie Kashima
5. Yutaka Suzuki
6. Yoshio Koyanagi
7. Kei Sato
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Dec 28, 2022Latest activity Nov 13, 2023
Integrating deep mutational scanning and low-throughput mutagenesis data to predict the impact of amino acid variants

This article has 4 authors:
1. Yunfan Fu
2. Justin Bedő
3. Anthony T. Papenfuss
4. Alan F. Rubin
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Dec 16, 2022Latest activity Oct 17, 2023
Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids

This article has 6 authors:
1. Anneri Lötter
2. Tuan A Duong
3. Julia Candotti
4. Eshchar Mizrachi
5. Jill L Wegrzyn
6. Alexander A Myburg
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Dec 28, 2022Latest activity Sep 4, 2023
KGML-xDTD: A Knowledge Graph-based Machine Learning Framework for Drug Treatment Prediction and Mechanism Description

This article has 4 authors:
1. Chunyu Ma
2. Zhihan Zhou
3. Han Liu
4. David Koslicki
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Apr 25, 2023Latest activity Sep 4, 2023
GADMA2: more efficient and flexible demographic inference from genetic data

This article has 6 authors:
1. Ekaterina Noskova
2. Nikita Abramov
3. Stanislav Iliutkin
4. Anton Sidorin
5. Pavel Dobrynin
6. Vladimir Ulyantsev
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jun 29, 2023Latest activity Sep 4, 2023
Metaphor - A workflow for streamlined assembly and binning of metagenomes

This article has 8 authors:
1. Vinícius W. Salazar
2. Babak Shaban
3. Maria del Mar Quiroga
4. Robert Turnbull
5. Edoardo Tescari
6. Vanessa Rossetto Marcelino
7. Heroen Verbruggen
8. Kim-Anh Lê Cao
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Feb 10, 2023Latest activity Aug 21, 2023
Metaphor - A workflow for streamlined assembly and binning of metagenomes

This article has 8 authors:
1. Vinícius W. Salazar
2. Babak Shaban
3. Maria del Mar Quiroga
4. Robert Turnbull
5. Edoardo Tescari
6. Vanessa Rossetto Marcelino
7. Heroen Verbruggen
8. Kim-Anh Lê Cao
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Feb 10, 2023Latest activity Aug 21, 2023
Hetnet connectivity search provides rapid insights into how two biomedical entities are related

This article has 12 authors:
1. Daniel S. Himmelstein
2. Michael Zietz
3. Vincent Rubinetti
4. Kyle Kloster
5. Benjamin J. Heil
6. Faisal Alquaddoomi
7. Dongbo Hu
8. David N. Nicholson
9. Yun Hao
10. Blair D. Sullivan
11. Michael W. Nagle
12. Casey S. Greene
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 7, 2023Latest activity Aug 21, 2023
SODAR: managing multi-omics study data and metadata

This article has 7 authors:
1. Mikko Nieminen
2. Oliver Stolpe
3. Mathias Kuhring
4. January Weiner
5. Patrick Pett
6. Dieter Beule
7. Manuel Holtgrewe
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version May 17, 2023Latest activity Aug 21, 2023
MuLan-Methyl - Multiple Transformer-based Language Models for Accurate DNA Methylation Prediction

This article has 3 authors:
1. Wenhuan Zeng
2. Anupam Gautam
3. Daniel H. Huson
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jun 1, 2023Latest activity Aug 21, 2023
A new haplotype-resolved turkey genome to enable turkey genetics and genomics research

This article has 8 authors:
1. Carolina P Barros
2. Martijn F L Derks
3. Jeff Mohr
4. Benjamin J Wood
5. Richard P M A Crooijmans
6. Hendrik-Jan Megens
7. Marco C A M Bink
8. Martien A M Groenen
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Dec 28, 2022Latest activity Aug 21, 2023
Training Infrastructure as a Service

This article has 2 authors:
1. Helena Rasche
2. Björn Grüning
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Aug 24, 2020Latest activity Jul 4, 2023
EraSOR: Erase Sample Overlap in polygenic score analyses

This article has 4 authors:
1. Shing Wan Choi
2. Timothy Shin Heng Mak
3. Clive J. Hoggart
4. Paul F. O’Reilly
Reviewed by GigaScience

This article has 6 evaluationsAppears in 1 listLatest version Dec 13, 2021Latest activity Jul 4, 2023
FriendlyClearMap: An optimized toolkit for mouse brain mapping and analysis

This article has 9 authors:
1. Moritz Negwer
2. Bram Bosch
3. Maren Bormann
4. Rick Hesen
5. Lukas Lütje
6. Lynn Aarts
7. Carleen Rossing
8. Nael Nadif Kasri
9. Dirk Schubert
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Feb 18, 2023Latest activity Jun 19, 2023
Strategies and Techniques for Quality Control and Semantic Enrichment with Multimodal Data: A Case Study in Colorectal Cancer with eHDPrep

This article has 5 authors:
1. Tom M Toner
2. Paul Miller
3. Thorsten Forster
4. Helen G Coleman
5. Ian M Overton
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Sep 9, 2022Latest activity Jun 19, 2023