Evaluated articles

Showing page 3 of 20 pages of list content

SRY: An Effective Method for Sorting Long Reads of Sex-limited Chromosome

This article has 4 authors:
1. Xiao-Bo Wang
2. Qing-You Liu
3. A-Lun Li
4. Jue Ruan
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version May 28, 2020Latest activity May 13, 2024
Streamlining remote nanopore data access with slow5curl

This article has 4 authors:
1. Bonson Wong
2. James M. Ferguson
3. Hasindu Gamaarachchi
4. Ira W. Deveson
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Nov 30, 2023Latest activity May 13, 2024
On the variability of dynamic functional connectivity assessment methods

This article has 3 authors:
1. Mohammad Torabi
2. Georgios D Mitsis
3. Jean-Baptiste Poline
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2024Latest activity May 13, 2024
Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data

This article has 2 authors:
1. Michael B Hall
2. Lachlan J M Coin
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2024Latest activity May 13, 2024
Improved integration of single cell transcriptome data demonstrated on heart failure in mice and men

This article has 10 authors:
1. Mariano Ruz Jurado
2. Lukas Stefan Tombor
3. Mani Arsalan
4. Thomas Holubec
5. Fabian Emrich
6. Thomas Walther
7. Andreas M. Zeiher
8. Marcel H. Schulz
9. Stefanie Dimmeler
10. David John
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Mar 15, 2023Latest activity May 12, 2024
Multi-omic dataset of patient-derived tumor organoids of neuroendocrine neoplasms

This article has 8 authors:
1. Nicolas Alcala
2. Catherine Voegele
3. Lise Mangiante
4. Alexandra Sexton-Oates
5. Hans Clevers
6. Lynnette Fernandez-Cuesta
7. Talya L Dayton
8. Matthieu Foll
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Jan 1, 2024Latest activity Apr 8, 2024
The probability of edge existence due to node degree: a baseline for network-based predictions

This article has 6 authors:
1. Michael Zietz
2. Daniel S Himmelstein
3. Kyle Kloster
4. Christopher Williams
5. Michael W Nagle
6. Casey S Greene
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 1, 2024Latest activity Mar 4, 2024
spatiAlign: an unsupervised contrastive learning model for data integration of spatially resolved transcriptomics

This article has 10 authors:
1. Chao Zhang
2. Lin Liu
3. Ying Zhang
4. Mei Li
5. Shuangsang Fang
6. Qiang Kang
7. Ao Chen
8. Xun Xu
9. Yong Zhang
10. Yuxiang Li
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Jan 1, 2024Latest activity Nov 23, 2024
Machine Learning Made Easy (MLme): a comprehensive toolkit for machine learning–driven data analysis

This article has 9 authors:
1. Akshay Akshay
2. Mitali Katoch
3. Navid Shekarchizadeh
4. Masoud Abedi
5. Ankush Sharma
6. Fiona C Burkhard
7. Rosalyn M Adam
8. Katia Monastyrskaya
9. Ali Hashemi Gheinani
Reviewed by GigaScience

This article has 5 evaluationsAppears in 1 listLatest version Jan 1, 2024Latest activity Feb 11, 2024
A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object

This article has 13 authors:
1. Anna Niehues
2. Casper de Visser
3. Fiona A. Hagenbeek
4. Purva Kulkarni
5. Rene Pool
6. Naama Karu
7. Alida S. D. Kindt
8. Gurnoor Singh
9. Robert R. J. M. Vermeiren
10. Dorret I. Boomsma
11. Jenny van Dongen
12. Peter A. C. 't Hoen
13. Alain J. van Gool
Reviewed by GigaScience

This article has 3 evaluationsAppears in 2 listsLatest version Jun 9, 2023Latest activity Feb 11, 2024
Vulture: cloud-enabled scalable mining of microbial reads in public scRNA-seq data

This article has 6 authors:
1. Junyi Chen
2. Danqing Yin
3. Harris Y H Wong
4. Xin Duan
5. Ken H O Yu
6. Joshua W K Ho
Reviewed by GigaScience

This article has 4 evaluationsAppears in 1 listLatest version Jan 1, 2024Latest activity Feb 11, 2024
A high-quality pseudo-phased genome for Melaleuca quinquenervia shows allelic diversity of NLR-type resistance genes

This article has 9 authors:
1. Stephanie H Chen
2. Alyssa M Martino
3. Zhenyan Luo
4. Benjamin Schwessinger
5. Ashley Jones
6. Tamene Tolessa
7. Jason G Bragg
8. Peri A Tobias
9. Richard J Edwards
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Apr 28, 2023Latest activity Jan 22, 2024
Variance Analysis of LC-MS Experimental Factors and Their Impact on Machine Learning

This article has 7 authors:
1. Tobias Greisager Rehfeldt
2. Konrad Krawczyk
3. Simon Gregersen Echers
4. Paolo Marcatili
5. Pawel Palczynski
6. Richard Röttger
7. Veit Schwämmle
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version May 2, 2023Latest activity Jan 2, 2024
Finding the LMA needle in the wheat proteome haystack

This article has 11 authors:
1. Delphine Vincent
2. AnhDuyen Bui
3. Vilnis Ezernieks
4. Saleh Shahinfar
5. Timothy Luke
6. Doris Ram
7. Nicholas Rigas
8. Joe Panozzo
9. Simone Rochfort
10. Hans Daetwyler
11. Matthew Hayden
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jan 23, 2023Latest activity Jan 2, 2024
When do longer reads matter? A benchmark of long read de novo assembly tools for eukaryotic genomes

This article has 7 authors:
1. Bianca-Maria Cosma
2. Ramin Shirali Hossein Zade
3. Erin Noel Jordan
4. Paul van Lent
5. Chengyao Peng
6. Stephanie Pillay
7. Thomas Abeel
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Feb 2, 2023Latest activity Jan 2, 2024
SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis

This article has 10 authors:
1. Akshay Akshay
2. Mitali Katoch
3. Masoud Abedi
4. Mustafa Besic
5. Navid Shekarchizadeh
6. Fiona C. Burkhard
7. Alex Bigger-Allen
8. Rosalyn M. Adam
9. Katia Monastyrskaya
10. Ali Hashemi Gheinani
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Jun 28, 2023Latest activity Nov 13, 2023
cellsnake: a user-friendly tool for single-cell RNA sequencing analysis

This article has 7 authors:
1. Sinan U. Umu
2. Karoline Rapp Vander-Elst
3. Victoria T. Karlsen
4. Manto Chouliara
5. Espen Sønderaal Bækkevold
6. Frode Lars Jahnsen
7. Diana Domanska
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Aug 26, 2023Latest activity Nov 13, 2023
Developing best practices for genotyping-by-sequencing analysis in the construction of linkage maps

This article has 12 authors:
1. Cristiane Hayumi Taniguti
2. Lucas Mitsuo Taniguti
3. Rodrigo Rampazo Amadeu
4. Jeekin Lau
5. Gabriel de Siqueira Gesteira
6. Thiago de Paula Oliveira
7. Getulio Caixeta Ferreira
8. Guilherme da Silva Pereira
9. David Byrne
10. Marcelo Mollinari
11. Oscar Riera-Lizarazu
12. Antonio Augusto Franco Garcia
Reviewed by GigaScience

This article has 3 evaluationsAppears in 1 listLatest version Oct 6, 2023Latest activity Nov 13, 2023
Computational prediction of human deep intronic variation

This article has 4 authors:
1. Pedro Barbosa
2. Rosina Savisaar
3. Maria Carmo-Fonseca
4. Alcides Fonseca
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Feb 17, 2023Latest activity Nov 13, 2023
Single-cell transcriptome analysis illuminating the characteristics of species-specific innate immune responses against viral infections

This article has 7 authors:
1. Hirofumi Aso
2. Jumpei Ito
3. Haruka Ozaki
4. Yukie Kashima
5. Yutaka Suzuki
6. Yoshio Koyanagi
7. Kei Sato
Reviewed by GigaScience

This article has 2 evaluationsAppears in 1 listLatest version Dec 28, 2022Latest activity Nov 13, 2023

Evaluated articles

SRY: An Effective Method for Sorting Long Reads of Sex-limited Chromosome

Streamlining remote nanopore data access with slow5curl

On the variability of dynamic functional connectivity assessment methods

Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data

Improved integration of single cell transcriptome data demonstrated on heart failure in mice and men

Multi-omic dataset of patient-derived tumor organoids of neuroendocrine neoplasms

The probability of edge existence due to node degree: a baseline for network-based predictions

spatiAlign: an unsupervised contrastive learning model for data integration of spatially resolved transcriptomics

Machine Learning Made Easy (MLme): a comprehensive toolkit for machine learning–driven data analysis

A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object

Vulture: cloud-enabled scalable mining of microbial reads in public scRNA-seq data

A high-quality pseudo-phased genome for Melaleuca quinquenervia shows allelic diversity of NLR-type resistance genes

Variance Analysis of LC-MS Experimental Factors and Their Impact on Machine Learning

Finding the LMA needle in the wheat proteome haystack

When do longer reads matter? A benchmark of long read de novo assembly tools for eukaryotic genomes

SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis

cellsnake: a user-friendly tool for single-cell RNA sequencing analysis

Developing best practices for genotyping-by-sequencing analysis in the construction of linkage maps

Computational prediction of human deep intronic variation

Single-cell transcriptome analysis illuminating the characteristics of species-specific innate immune responses against viral infections