Arcadia Science

Latest preprint reviews

1. The phylogenetic context for the origin of a unique purple-green photosymbiosis

   This article has 7 authors:

   1. Sergio A. Muñoz-Gómez
   2. Megan E.S. Sørensen
   3. Shahed U.A. Shazib
   4. Mann Kyoon Shin
   5. Thilo Bauer
   6. Martin Kreutz
   7. Sebastian Hess

   Reviewed by Arcadia Science

2. Ancestral Protein Reconstruction of a membrane trafficking GTPase uncovers unanticipated properties of the ancestral protein and of modern Arf1 GTPases

   This article has 5 authors:

   1. Marine Alves
   2. Mandeep Sivia
   3. Kristína Záhonová
   4. Catherine L. Jackson
   5. Joel B. Dacks

   Reviewed by Arcadia Science

3. 10,239 whole genomes with multiomic and clinical health information as the Korean Multiomics Reference dataset

   This article has 75 authors:

   1. Kyungwhan An
   2. Sungwon Jeon
   3. Yoonsung Kwon
   4. Yookyung Choi
   5. Changhan Yoon
   6. Yeonsu Jeon
   7. Jihun Bhak
   8. Dong-Hyun Shin
   9. Hyoung-Jin Choi
   10. Hyomin Lee
   11. Yeo Jin Kim
   12. Eun-Seok Shin
   13. Hyojung Ryu
   14. Asta Blazyte
   15. Sangsoo Park
   16. Juok Cho
   17. Dan Bolser
   18. Soobok Joe
   19. Jin Ok Yang
   20. Jongbum Jeon
   21. Jong-Hwan Kim
   22. Jungeun Kim
   23. Dooyoung Jung
   24. Yun Sung Cho
   25. Kiyuk Chang
   26. Eun Ho Choo
   27. Eunmin Kim
   28. Sang Yeub Lee
   29. Weon Kim
   30. Min Gyu Kang
   31. Ae-Young Her
   32. Suk Chon
   33. Jeong-Taek Woo
   34. Sang Youl Rhee
   35. Siwoo Lee
   36. Hyo-Jeong Ban
   37. Hee-Jeong Jin
   38. Younghwa Baek
   39. Yong Min Ahn
   40. Sang Jin Rhee
   41. Min Ji Kim
   42. Sang Yeol Lee
   43. Chan-Mo Yang
   44. Se-Hoon Shim
   45. Seong-Jin Cho
   46. Shin Gyeom Kim
   47. Hyung-Tae Jung
   48. Byung-Joo Ham
   49. Yoon Young Choi
   50. Jae-Ho Cheong
   51. Seung-Ki Kim
   52. Ji Hoon Phi
   53. Seung Ah Choi
   54. Heon Yung Gee
   55. Sun Young Joo
   56. Jinsei Jung
   57. Wonsuk Shin
   58. Sang-Hyuk Lee
   59. Borah Kim
   60. Woojae Myung
   61. Chong Kun Cheon
   62. Dong Uk Kim
   63. Seok-Soo Byun
   64. Gangnam Jin
   65. Hojune Lee
   66. Kyun Shik Chae
   67. Chang Geun Kim
   68. Bonghee Lee
   69. Jaesuk Lee
   70. Kwangwoo Kim
   71. Semin Lee
   72. Neung-Hwa Park
   73. Haeyoung Jeong
   74. George M. Church
   75. Jong Bhak

   Reviewed by Arcadia Science

4. Predictive design of tissue-specific mammalian enhancers that function in vivo in the mouse embryo

   This article has 8 authors:

   1. Shenzhi Chen
   2. Vincent Loubiere
   3. Ethan W. Hollingsworth
   4. Sandra H. Jacinto
   5. Atrin Dizehchi
   6. Jacob Schreiber
   7. Evgeny Z. Kvon
   8. Alexander Stark

   Reviewed by Arcadia Science

5. ProFam: Open-Source Protein Family Language Modelling for Fitness Prediction and Design

   This article has 11 authors:

   1. Jude Wells
   2. Alex Hawkins Hooker
   3. Micha Livne
   4. Weining Lin
   5. David Miller
   6. Christian Dallago
   7. Nicola Bordin
   8. Brooks Paige
   9. Burkhard Rost
   10. Christine Orengo
   11. Michael Heinzinger

   Reviewed by Arcadia Science

6. RemoteFoldSet: Benchmarking Structural Awareness of Protein Language Models

   This article has 2 authors:

   1. Zinnia Ma
   2. Neville P. Bethel

   Reviewed by Arcadia Science

7. Label-free biochemical imaging and timepoint analysis of neural organoids via deep learning-enhanced Raman microspectroscopy

   This article has 7 authors:

   1. Dimitar Georgiev
   2. Ruoxiao Xie
   3. Daniel Reumann
   4. Xiaoyu Zhao
   5. Álvaro Fernández-Galiana
   6. Mauricio Barahona
   7. Molly M. Stevens

   Reviewed by Arcadia Science

8. Beyond P-values: A Multi-Metric Framework for Robust Feature Selection and Predictive Modeling

   This article has 6 authors:

   1. Raelynn Chen
   2. Attri Ghosh
   3. Jie Hu
   4. Yong Chen
   5. Jason H. Moore
   6. Ruowang Li

   Reviewed by Arcadia Science

9. Weakly supervised learning uncovers phenotypic signatures in single-cell data

   This article has 5 authors:

   1. Anastasia Litinetskaya
   2. Soroor Hediyeh-zadeh
   3. Amir Ali Moinfar
   4. Mohammad Lotfollahi
   5. Fabian J. Theis

   Reviewed by Arcadia Science

10. Geno-pheno characterization of crop rhizospheres: An integrated Raman spectroscopy and microbiome approach in conventional and organic agriculture

    This article has 7 authors:

    1. Yejin Son
    2. Peisheng He
    3. Mathew Baldwin
    4. Guangyu Li
    5. Zijian Wang
    6. April Z. Gu
    7. Jenny Kao-Kniffin

    Reviewed by Arcadia Science