Arcadia Science

Latest preprint reviews

1. SARS-CoV-2 infected cells sprout actin-rich filopodia that facilitate viral invasion

   This article has 14 authors:

   1. Yue Zhang
   2. Xiaowei Zhang
   3. Zhongyi Li
   4. Weisong Zhao
   5. Hui Yang
   6. Daijiao Tang
   7. Shuangshuang Zhao
   8. Qian Zhang
   9. Huisheng Liu
   10. Haoyu Li
   11. Bo Li
   12. Pekka Lappalainen
   13. Zongqiang Cui
   14. Yaming Jiu

   Reviewed by Arcadia Science

2. High-throughput library transgenesis in Caenorhabditis elegans via Transgenic Arrays Resulting in Diversity of Integrated Sequences (TARDIS)

   This article has 6 authors:

   1. Zachary C Stevenson
   2. Megan J Moerdyk-Schauwecker
   3. Stephen A Banse
   4. Dhaval S Patel
   5. Hang Lu
   6. Patrick C Phillips

   This article has been curated by 1 group:

   • Curated by eLife

     eLife assessment

     This manuscript provides a description of an approach for efficiently integrating diverse libraries into the C. elegans genome and tools that enable researchers to use the method. It is a valuable contribution for researchers carrying out experiments that would benefit from easy generation of such libraries, and the data for the effectiveness of the method is solid. The advantages of this approach in terms of ease and effectiveness relative to others with similar aims will emerge as they are put to more general use in addressing biological problems.

   Reviewed by eLife, Arcadia Science

3. Phylogenomic analysis of Wolbachia genomes from the Darwin Tree of Life biodiversity genomics project

   This article has 2 authors:

   1. Emmelien Vancaester
   2. Mark Blaxter

   Reviewed by Arcadia Science

4. Monopolization at the cost of desiccation: Reduced waterproofing cuticular hydrocarbons impairs nestmate discrimination in an ant

   This article has 4 authors:

   1. Eyer Pierre-André
   2. Anjel M. Helms
   3. Megan N. Moran
   4. Edward L. Vargo

   Reviewed by Arcadia Science

5. Microbial community interactions on a chip

   This article has 11 authors:

   1. Duane S. Juang
   2. Wren E. Wightman
   3. Gabriel L. Lozano
   4. Terry D. Juang
   5. Layla J. Barkal
   6. Jiaquan Yu
   7. Manuel F. Garavito
   8. Amanda Hurley
   9. Ophelia S. Venturelli
   10. Jo Handelsman
   11. David J. Beebe

   Reviewed by Arcadia Science

6. Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows

   This article has 26 authors:

   1. Ryan Connor
   2. Migun Shakya
   3. David A. Yarmosh
   4. Wolfgang Maier
   5. Ross Martin
   6. Rebecca Bradford
   7. J. Rodney Brister
   8. Patrick S. G. Chain
   9. Courtney A. Copeland
   10. Julia di Iulio
   11. Bin Hu
   12. Philip Ebert
   13. Jonathan Gunti
   14. Yumi Jin
   15. Kenneth S. Katz
   16. Andrey Kochergin
   17. Tré LaRosa
   18. Jiani Li
   19. Po-E Li
   20. Chien-Chi Lo
   21. Sujatha Rashid
   22. Evguenia S. Maiorova
   23. Chunlin Xiao
   24. Vadim Zalunin
   25. Lisa Purcell
   26. Kim D. Pruitt

   Reviewed by Arcadia Science

7. Evolutionary-scale prediction of atomic-level protein structure with a language model

   This article has 15 authors:

   1. Zeming Lin
   2. Halil Akin
   3. Roshan Rao
   4. Brian Hie
   5. Zhongkai Zhu
   6. Wenting Lu
   7. Nikita Smetanin
   8. Robert Verkuil
   9. Ori Kabeli
   10. Yaniv Shmueli
   11. Allan dos Santos Costa
   12. Maryam Fazel-Zarandi
   13. Tom Sercu
   14. Salvatore Candido
   15. Alexander Rives

   Reviewed by Arcadia Science

8. Transcription-replication interactions reveal principles of bacterial genome regulation

   This article has 10 authors:

   1. Andrew W. Pountain
   2. Peien Jiang
   3. Tianyou Yao
   4. Ehsan Homaee
   5. Yichao Guan
   6. Magdalena Podkowik
   7. Bo Shopsin
   8. Victor J. Torres
   9. Ido Golding
   10. Itai Yanai

   Reviewed by Arcadia Science

9. Genome and life-history evolution link bird diversification to the end-Cretaceous mass extinction

   This article has 15 authors:

   1. Jacob S. Berv
   2. Sonal Singhal
   3. Daniel J. Field
   4. Nathanael Walker-Hale
   5. Sean W. McHugh
   6. J. Ryan Shipley
   7. Eliot T. Miller
   8. Rebecca T. Kimball
   9. Edward L. Braun
   10. Alex Dornburg
   11. C. Tomomi Parins-Fukuchi
   12. Richard O. Prum
   13. Benjamin M. Winger
   14. Matt Friedman
   15. Stephen A. Smith

   Reviewed by Arcadia Science

10. Restriction Endonuclease-Based Modification-Dependent Enrichment (REMoDE) of DNA for Metagenomic Sequencing

    This article has 6 authors:

    1. Syed Usman Enam
    2. Joshua L. Cherry
    3. Susan R. Leonard
    4. Ivan N. Zheludev
    5. David J. Lipman
    6. Andrew Z. Fire

    Reviewed by Arcadia Science