Arcadia Science

Latest preprint reviews

1. Evolutionary Reasoning Does Not Arise in Standard Usage of Protein Language Models

   This article has 5 authors:

   1. Yasha Ektefaie
   2. Andrew Shen
   3. Lavik Jain
   4. Maha Farhat
   5. Marinka Zitnik

   Reviewed by Arcadia Science

2. Selenium protects Emiliania huxleyi algae from a bacterial pathogen by modulating oxidative stress

   This article has 3 authors:

   1. Roni Beiralas
   2. Shira Ben-Asher
   3. Einat Segev

   Reviewed by Arcadia Science

3. Micro𝕊plit: Semantic Unmixing of Fluorescent Microscopy Data

   This article has 26 authors:

   1. Ashesh Ashesh
   2. Federico Carrara
   3. Igor Zubarev
   4. Vera Galinova
   5. Melisande Croft
   6. Melissa Pezzotti
   7. Daozheng Gong
   8. Francesca Casagrande
   9. Elisa Colombo
   10. Stefania Giussani
   11. Elena Restelli
   12. Eugenia Cammarota
   13. Juan Manuel Battagliotti
   14. Nikolai Klena
   15. Moises Di Sante
   16. Raghabendra Adhikari
   17. Daniel Feliciano
   18. Gaia Pigino
   19. Elena Taverna
   20. Oliver Harschnitz
   21. Nicola Maghelli
   22. Norbert Scherer
   23. Damian Edward Dalle Nogare
   24. Joran Deschamps
   25. Francesco Pasqualini
   26. Florian Jug

   Reviewed by Arcadia Science

4. Integrated flexible DNA methylation-chromatin segmentation modeling enhances epigenomic state annotation

   This article has 6 authors:

   1. Nihit Aggarwal
   2. Johanna Elena Schmitz
   3. Lukas Laufer
   4. Sven Rahmann
   5. Jörn Walter
   6. Abdulrahman Salhab

   Reviewed by Arcadia Science

5. A knowledge-based distance metric highlights underperformance of variant effect predictors on gain-of-function missense variants

   This article has 2 authors:

   1. Lukas Gerasimavicius
   2. Joseph A. Marsh

   Reviewed by Arcadia Science

6. Cellpose-SAM: superhuman generalization for cellular segmentation

   This article has 3 authors:

   1. Marius Pachitariu
   2. Michael Rariden
   3. Carsen Stringer

   Reviewed by Arcadia Science

7. Machine Learning and Network Analysis to Predict Hypothetical Protein Functions of Aeromonas hydrophila

   This article has 7 authors:

   1. Harun Pirim
   2. Zaidur Rahman
   3. Saviz Saei
   4. Sangam Gyawali
   5. Mohammad Marufuzzaman
   6. Nazanin Tajik
   7. Hasan Tekedar

   Reviewed by Arcadia Science

8. A miniaturized, high-throughput aqueous solvent-centric method for protein solubility screening

   This article has 6 authors:

   1. Adrian Svoboda
   2. Marina Molineris
   3. Theodora Tureckiova
   4. Klára Hlouchová
   5. Tomáš Pluskal
   6. Teo Hebra

   Reviewed by Arcadia Science

9. Borzoi-informed fine mapping improves causal variant prioritization in complex trait GWAS

   This article has 6 authors:

   1. Divyanshi Srivastava
   2. Anya Korsakova
   3. Qingbo Wang
   4. Luong Ruiz
   5. Han Yuan
   6. David R Kelley

   Reviewed by Arcadia Science

10. Emergence of specific binding and catalysis from a designed generalist binding protein

    This article has 14 authors:

    1. Yuda Chen
    2. Sagar Bhattacharya
    3. Lena Bergmann
    4. Galen J. Correy
    5. Sophia K. Tan
    6. Kaipeng Hou
    7. Justin Biel
    8. Lei Lu
    9. Ian Bakanas
    10. Alexander N. Volkov
    11. Ivan V. Korendovych
    12. Nicholas F. Polizzi
    13. James S. Fraser
    14. William F. DeGrado

    Reviewed by Arcadia Science