Genomics

  1. Haplotype Explorer: an infection cluster visualization tool for spatiotemporal dissection of the COVID-19 pandemic

    1. Tetsuro Kawano-Sugaya
    2. Koji Yatsu
    3. Tsuyoshi Sekizuka
    4. Kentaro Itokawa
    5. Masanori Hashino
    6. Rina Tanaka
    7. Makoto Kuroda

    Reviewed by ScreenIT

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  2. Within-patient genetic diversity of SARS-CoV-2

    1. Jack Kuipers
    2. Aashil A Batavia
    3. Kim Philipp Jablonski
    4. Fritz Bayer
    5. Nico Borgsmüller
    6. Arthur Dondi
    7. Monica-Andreea Drăgan
    8. Pedro Ferreira
    9. Katharina Jahn
    10. Lisa Lamberti
    11. Martin Pirkl
    12. Susana Posada-Céspedes
    13. Ivan Topolsky
    14. Ina Nissen
    15. Natascha Santacroce
    16. Elodie Burcklen
    17. Tobias Schär
    18. Vincenzo Capece
    19. Christiane Beckmann
    20. Olivier Kobel
    21. Christoph Noppen
    22. Maurice Redondo
    23. Sarah Nadeau
    24. Sophie Seidel
    25. Noemie Santamaria de Souza
    26. Christian Beisel
    27. Tanja Stadler
    28. Niko Beerenwinkel

    Reviewed by ScreenIT

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  3. The genomic epidemiology of SARS-CoV-2 in Palestine

    1. Nouar Qutob
    2. Zaidoun Salah
    3. Damien Richard
    4. Hisham Darwish
    5. Husam Sallam
    6. Issa Shtayeh
    7. Osama Najjar
    8. Mahmoud Ruzayqat
    9. Dana Najjar
    10. François Balloux
    11. Lucy van Dorp

    Reviewed by ScreenIT

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  4. Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis

    1. Rowena A. Bull
    2. Thiruni N. Adikari
    3. James M. Ferguson
    4. Jillian M. Hammond
    5. Igor Stevanovski
    6. Alicia G. Beukers
    7. Zin Naing
    8. Malinna Yeang
    9. Andrey Verich
    10. Hasindu Gamaarachchi
    11. Ki Wook Kim
    12. Fabio Luciani
    13. Sacha Stelzer-Braid
    14. John-Sebastian Eden
    15. William D. Rawlinson
    16. Sebastiaan J. van Hal
    17. Ira W. Deveson

    Reviewed by ScreenIT

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  5. A common methodological phylogenomics framework for intra-patient heteroplasmies to infer SARS-CoV-2 sublineages and tumor clones

    1. Filippo Utro
    2. Chaya Levovitz
    3. Kahn Rhrissorrakrai
    4. Laxmi Parida

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  6. Predicting the animal hosts of coronaviruses from compositional biases of spike protein and whole genome sequences through machine learning

    1. Liam Brierley
    2. Anna Fowler

    Reviewed by ScreenIT

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  7. Global Geographic and Temporal Analysis of SARS-CoV-2 Haplotypes Normalized by COVID-19 Cases During the Pandemic

    1. Santiago Justo Arevalo
    2. Daniela Zapata Sifuentes
    3. César J. Huallpa
    4. Gianfranco Landa Bianchi
    5. Adriana Castillo Chávez
    6. Romina Garavito-Salini Casas
    7. Guillermo Uceda-Campos
    8. Roberto Pineda Chavarria

    Reviewed by ScreenIT

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  8. Spatio-temporal dynamics of intra-host variability in SARS-CoV-2 genomes

    1. Ankit K Pathak
    2. Gyan Prakash Mishra
    3. Bharathram Uppili
    4. Safal Walia
    5. Saman Fatihi
    6. Tahseen Abbas
    7. Sofia Banu
    8. Arup Ghosh
    9. Amol Kanampalliwar
    10. Atimukta Jha
    11. Sana Fatma
    12. Shifu Aggarwal
    13. Mahesh Shanker Dhar
    14. Robin Marwal
    15. Venkatraman Srinivasan Radhakrishnan
    16. Kalaiarasan Ponnusamy
    17. Sandhya Kabra
    18. Partha Rakshit
    19. Rahul C Bhoyar
    20. Abhinav Jain
    21. Mohit Kumar Divakar
    22. Mohamed Imran
    23. Mohammed Faruq
    24. Divya Tej Sowpati
    25. Lipi Thukral
    26. Sunil K Raghav
    27. Mitali Mukerji

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  9. Analysis of Indian SARS-CoV-2 Genomes Reveals Prevalence of D614G Mutation in Spike Protein Predicting an Increase in Interaction With TMPRSS2 and Virus Infectivity

    1. Sunil Raghav
    2. Arup Ghosh
    3. Jyotirmayee Turuk
    4. Sugandh Kumar
    5. Atimukta Jha
    6. Swati Madhulika
    7. Manasi Priyadarshini
    8. Viplov K. Biswas
    9. P. Sushree Shyamli
    10. Bharati Singh
    11. Neha Singh
    12. Deepika Singh
    13. Ankita Datey
    14. Kiran Avula
    15. Shuchi Smita
    16. Jyotsnamayee Sabat
    17. Debdutta Bhattacharya
    18. Jaya Singh Kshatri
    19. Dileep Vasudevan
    20. Amol Suryawanshi
    21. Rupesh Dash
    22. Shantibhushan Senapati
    23. Tushar K. Beuria
    24. Rajeeb Swain
    25. Soma Chattopadhyay
    26. Gulam Hussain Syed
    27. Anshuman Dixit
    28. Punit Prasad
    29. Sanghamitra Pati
    30. Ajay Parida
    31. Odisha COVID-19 Study Group
    32. ILS COVID-19 Team

    Reviewed by ScreenIT

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  10. Mutational Analysis of SARS-CoV-2 Genome in African Population

    1. Olabode E. Omotoso
    2. Ayoade D. Babalola
    3. Amira Matareek

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity
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