Genomics

  1. Genomic analysis reveals local transmission of SARS-CoV-2 in early pandemic phase in Peru

    1. Carlos Padilla-Rojas
    2. Karolyn Vega-Chozo
    3. Marco Galarza-Perez
    4. Henri Bailon Calderon
    5. Priscila Lope-Pari
    6. Johanna Balbuena-Torres
    7. David Garcia Neyra
    8. Maribel Huaringa-Nuñez
    9. Nancy Rojas-Serrano
    10. Omar A. Caceres-Rey

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  2. Real-time monitoring epidemic trends and key mutations in SARS-CoV-2 evolution by an automated tool

    1. Binbin Xi
    2. Dawei Jiang
    3. Shuhua Li
    4. Jerome R Lon
    5. Yunmeng Bai
    6. Shudai Lin
    7. Meiling Hu
    8. Yuhuan Meng
    9. Yimo Qu
    10. Yuting Huang
    11. Wei Liu
    12. Hongli Du

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  3. Host transcriptomic profiling of COVID-19 patients with mild, moderate, and severe clinical outcomes

    1. Ruchi Jain
    2. Sathishkumar Ramaswamy
    3. Divinlal Harilal
    4. Mohammed Uddin
    5. Tom Loney
    6. Norbert Nowotny
    7. Hanan Alsuwaidi
    8. Rupa Varghese
    9. Zulfa Deesi
    10. Abdulmajeed Alkhajeh
    11. Hamda Khansaheb
    12. Alawi Alsheikh-Ali
    13. Ahmad Abou Tayoun

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  4. Ultrafast Sample Placement on Existing Trees (UShER) Empowers Real-Time Phylogenetics for the SARS-CoV-2 Pandemic

    1. Yatish Turakhia
    2. Bryan Thornlow
    3. Angie S. Hinrichs
    4. Nicola De Maio
    5. Landen Gozashti
    6. Robert Lanfear
    7. David Haussler
    8. Russell Corbett-Detig

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  5. No detectable signal for ongoing genetic recombination in SARS-CoV-2

    1. Damien Richard
    2. Christopher J. Owen
    3. Lucy van Dorp
    4. François Balloux

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  6. Analysis of the Dynamics and Distribution of SARS-CoV-2 Mutations and its Possible Structural and Functional Implications

    1. Santiago Justo Arévalo
    2. Daniela Zapata Sifuentes
    3. César Huallpa Robles
    4. Gianfranco Landa Bianchi
    5. Adriana Castillo Chávez
    6. Romina Garavito-Salini Casas
    7. Roberto Pineda Chavarría
    8. Guillermo Uceda-Campos

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  7. Distinct mutations and lineages of SARS-CoV-2 virus in the early phase of COVID-19 pandemic and subsequent one-year global expansion

    1. Yan Chen
    2. Shiyong Li
    3. Wei Wu
    4. Shuaipeng Geng
    5. Mao Mao

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  8. The emergence of inter-clade hybrid SARS-CoV-2 lineages revealed by 2D nucleotide variation mapping

    1. Hai-Long Wang

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  9. Integrated analysis of multimodal single-cell data

    1. Yuhan Hao
    2. Stephanie Hao
    3. Erica Andersen-Nissen
    4. William M. Mauck
    5. Shiwei Zheng
    6. Andrew Butler
    7. Maddie J. Lee
    8. Aaron J. Wilk
    9. Charlotte Darby
    10. Michael Zagar
    11. Paul Hoffman
    12. Marlon Stoeckius
    13. Efthymia Papalexi
    14. Eleni P. Mimitou
    15. Jaison Jain
    16. Avi Srivastava
    17. Tim Stuart
    18. Lamar B. Fleming
    19. Bertrand Yeung
    20. Angela J. Rogers
    21. Juliana M. McElrath
    22. Catherine A. Blish
    23. Raphael Gottardo
    24. Peter Smibert
    25. Rahul Satija

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  10. Origin of imported SARS-CoV-2 strains in The Gambia identified from whole genome sequences

    1. Abdoulie Kanteh
    2. Jarra Manneh
    3. Sona Jabang
    4. Mariama A. Kujabi
    5. Bakary Sanyang
    6. Mary A. Oboh
    7. Abdoulie Bojang
    8. Haruna S. Jallow
    9. Davis Nwakanma
    10. Ousman Secka
    11. Anna Roca
    12. Alfred Amambua-Ngwa
    13. Martin Antonio
    14. Ignatius Baldeh
    15. Karen Forrest
    16. Ahmadou Lamin Samateh
    17. Umberto D’Alessandro
    18. Abdul Karim Sesay

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