Genomics

  1. Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples

    1. Minfeng Xiao
    2. Xiaoqing Liu
    3. Jingkai Ji
    4. Min Li
    5. Jiandong Li
    6. Lin Yang
    7. Wanying Sun
    8. Peidi Ren
    9. Guifang Yang
    10. Jincun Zhao
    11. Tianzhu Liang
    12. Huahui Ren
    13. Tian Chen
    14. Huanzi Zhong
    15. Wenchen Song
    16. Yanqun Wang
    17. Ziqing Deng
    18. Yanping Zhao
    19. Zhihua Ou
    20. Daxi Wang
    21. Jielun Cai
    22. Xinyi Cheng
    23. Taiqing Feng
    24. Honglong Wu
    25. Yanping Gong
    26. Huanming Yang
    27. Jian Wang
    28. Xun Xu
    29. Shida Zhu
    30. Fang Chen
    31. Yanyan Zhang
    32. Weijun Chen
    33. Yimin Li
    34. Junhua Li

    Reviewed by ScreenIT

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  2. Highly sensitive and full-genome interrogation of SARS-CoV-2 using multiplexed PCR enrichment followed by next-generation sequencing

    1. Chenyu Li
    2. David N. Debruyne
    3. Julia Spencer
    4. Vidushi Kapoor
    5. Lily Y. Liu
    6. Bo Zhou
    7. Utsav Pandey
    8. Moiz Bootwalla
    9. Dejerianne Ostrow
    10. Dennis T Maglinte
    11. David Ruble
    12. Alex Ryutov
    13. Lishuang Shen
    14. Lucie Lee
    15. Rounak Feigelman
    16. Grayson Burdon
    17. Jeffrey Liu
    18. Alejandra Oliva
    19. Adam Borcherding
    20. Hongdong Tan
    21. Alexander E. Urban
    22. Xiaowu Gai
    23. Jennifer Dien Bard
    24. Guoying Liu
    25. Zhitong Liu

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  3. The Architecture of SARS-CoV-2 Transcriptome

    1. Dongwan Kim
    2. Joo-Yeon Lee
    3. Jeong-Sun Yang
    4. Jun Won Kim
    5. V. Narry Kim
    6. Hyeshik Chang

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  4. CRISPR-based surveillance for COVID-19 using genomically-comprehensive machine learning design

    1. Hayden C. Metsky
    2. Catherine A. Freije
    3. Tinna-Solveig F. Kosoko-Thoroddsen
    4. Pardis C. Sabeti
    5. Cameron Myhrvold

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  5. Comparative Genomic Analyses Reveal a Specific Mutation Pattern Between Human Coronavirus SARS-CoV-2 and Bat-CoV RaTG13

    1. Longxian Lv
    2. Gaolei Li
    3. Jinhui Chen
    4. Xinle Liang
    5. Yudong Li

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  6. Functional Pangenome Analysis Shows Key Features of E Protein Are Preserved in SARS and SARS-CoV-2

    1. Intikhab Alam
    2. Allan A. Kamau
    3. Maxat Kulmanov
    4. Łukasz Jaremko
    5. Stefan T. Arold
    6. Arnab Pain
    7. Takashi Gojobori
    8. Carlos M. Duarte

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  7. Single-cell analysis of angiotensin-converting enzyme II expression in human kidneys and bladders reveals a potential route of 2019 novel coronavirus infection

    1. Wei Lin
    2. Jue Fan
    3. Long-Fei Hu
    4. Yan Zhang
    5. Joshua D. Ooi
    6. Ting Meng
    7. Peng Jin
    8. Xiang Ding
    9. Long-Kai Peng
    10. Lei Song
    11. Rong Tang
    12. Zhou Xiao
    13. Xiang Ao
    14. Xiang-Cheng Xiao
    15. Qiao-Ling Zhou
    16. Ping Xiao
    17. Yong Zhong

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  8. Exploring the coronavirus pandemic with the WashU Virus Genome Browser

    1. Jennifer A. Flynn
    2. Deepak Purushotham
    3. Mayank N. K. Choudhary
    4. Xiaoyu Zhuo
    5. Changxu Fan
    6. Gavriel Matt
    7. Daofeng Li
    8. Ting Wang

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  9. Specific ACE2 Expression in Cholangiocytes May Cause Liver Damage After 2019-nCoV Infection

    1. Xiaoqiang Chai
    2. Longfei Hu
    3. Yan Zhang
    4. Weiyu Han
    5. Zhou Lu
    6. Aiwu Ke
    7. Jian Zhou
    8. Guoming Shi
    9. Nan Fang
    10. Jia Fan
    11. Jiabin Cai
    12. Jue Fan
    13. Fei Lan

    Reviewed by ScreenIT

    1 evaluationAppears in 1 listLatest version Latest activity

  10. Alternative paths to immune activation: the role of costimulatory risk genes for polygenic inflammatory disease in T helper cells

    1. Alexandru-Ioan Voda
    2. Kristina Correa
    3. Jonathan Hamp
    4. Chloe Moscrop
    5. Michael Dustin
    6. Luke Jostins-Dean

    • Curated by eLife

      eLife assessment

      This valuable study examines the effects of different co-stimulatory pathways on gene expression and chromatin accessibility in T cells, in order to link the role of co-stimulatory proteins to genetic variants associated with inflammatory bowl disease (IBD). The work provides valuable insight into the role of alternative co-stimulatory proteins in controlling T cell responses. However, the data presented and the analyses performed are still incomplete and inconclusive with regards to IBD risk factors.

    Reviewed by eLife

    3 evaluationsAppears in 1 listLatest version Latest activity
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