Bioinformatics

  1. BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows

    1. Ulysse Rubens
    2. Romain Mormont
    3. Lassi Paavolainen
    4. Volker Bäcker
    5. Benjamin Pavie
    6. Leandro A. Scholz
    7. Gino Michiels
    8. Martin Maška
    9. Devrim Ünay
    10. Graeme Ball
    11. Renaud Hoyoux
    12. Rémy Vandaele
    13. Ofra Golani
    14. Stefan G. Stanciu
    15. Natasa Sladoje
    16. Perrine Paul-Gilloteaux
    17. Raphaël Marée
    18. Sébastien Tosi

    Reviewed by preLights

    1 evaluationAppears in 1 listLatest version Latest activity

  2. Deep learning-based point-scanning super-resolution imaging

    1. Linjing Fang
    2. Fred Monroe
    3. Sammy Weiser Novak
    4. Lyndsey Kirk
    5. Cara R. Schiavon
    6. Seungyoon B. Yu
    7. Tong Zhang
    8. Melissa Wu
    9. Kyle Kastner
    10. Alaa Abdel Latif
    11. Zijun Lin
    12. Andrew Shaw
    13. Yoshiyuki Kubota
    14. John Mendenhall
    15. Zhao Zhang
    16. Gulcin Pekkurnaz
    17. Kristen Harris
    18. Jeremy Howard
    19. Uri Manor

    Reviewed by preLights

    1 evaluationAppears in 1 listLatest version Latest activity

  3. Zebrafish vascular quantification: a tool for quantification of three-dimensional zebrafish cerebrovascular architecture by automated image analysis

    1. Elisabeth C. Kugler
    2. James Frost
    3. Vishmi Silva
    4. Karen Plant
    5. Karishma Chhabria
    6. Tim J. A. Chico
    7. Paul A. Armitage

    Reviewed by preLights

    1 evaluationAppears in 1 listLatest version Latest activity

  4. GeneWalk identifies relevant gene functions for a biological context using network representation learning

    1. Robert Ietswaart
    2. Benjamin M. Gyori
    3. John A. Bachman
    4. Peter K. Sorger
    5. L. Stirling Churchman

    Reviewed by preLights

    1 evaluationAppears in 1 listLatest version Latest activity

  5. CLIJ: GPU-accelerated image processing for everyone

    1. Robert Haase
    2. Loic A. Royer
    3. Peter Steinbach
    4. Deborah Schmidt
    5. Alexandr Dibrov
    6. Uwe Schmidt
    7. Martin Weigert
    8. Nicola Maghelli
    9. Pavel Tomancak
    10. Florian Jug
    11. Eugene W. Myers

    Reviewed by preLights

    1 evaluationAppears in 1 listLatest version Latest activity

  6. Interactive design of GPU-accelerated Image Data Flow Graphs and cross-platform deployment using multi-lingual code generation

    1. Robert Haase
    2. Akanksha Jain
    3. Stéphane Rigaud
    4. Daniela Vorkel
    5. Pradeep Rajasekhar
    6. Theresa Suckert
    7. Talley J. Lambert
    8. Juan Nunez-Iglesias
    9. Daniel P. Poole
    10. Pavel Tomancak
    11. Eugene W. Myers

    Reviewed by preLights

    1 evaluationAppears in 1 listLatest version Latest activity

  7. A novel metric reveals previously unrecognized distortion in dimensionality reduction of scRNA-seq data

    1. Shamus M. Cooley
    2. Timothy Hamilton
    3. Samuel D. Aragones
    4. J. Christian J. Ray
    5. Eric J. Deeds

    Reviewed by preLights

    1 evaluationAppears in 1 listLatest version Latest activity

  8. BACPHLIP: predicting bacteriophage lifestyle from conserved protein domains

    1. Adam J. Hockenberry
    2. Claus O. Wilke

    Reviewed by PeerJ

    3 evaluationsAppears in 1 listLatest version Latest activity

  9. SCelVis: exploratory single cell data analysis on the desktop and in the cloud

    1. Benedikt Obermayer
    2. Manuel Holtgrewe
    3. Mikko Nieminen
    4. Clemens Messerschmidt
    5. Dieter Beule

    Reviewed by PeerJ

    6 evaluationsAppears in 1 listLatest version Latest activity

  10. Prognostic analysis of histopathological images using pre-trained convolutional neural networks: application to hepatocellular carcinoma

    1. Liangqun Lu
    2. Bernie J. Daigle

    Reviewed by PeerJ

    5 evaluationsAppears in 1 listLatest version Latest activity
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