1. Deep Boosted Molecular Dynamics (DBMD): Accelerating molecular simulations with Gaussian boost potentials generated using probabilistic Bayesian deep neural network

    This article has 2 authors:
    1. Hung N. Do
    2. Yinglong Miao

    Reviewed by PREreview

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  2. miR2Trait: an integrated resource for investigating miRNA-disease associations

    This article has 2 authors:
    1. Poornima Babu
    2. Ashok Palaniappan

    Reviewed by PeerJ

    This article has 3 evaluationsAppears in 1 listLatest version Latest activity
  3. Rephine.r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies

    This article has 2 authors:
    1. Jason W. Shapiro
    2. Catherine Putonti

    Reviewed by PeerJ

    This article has 4 evaluationsAppears in 1 listLatest version Latest activity
  4. PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly

    This article has 4 authors:
    1. Maxime Borry
    2. Alexander Hübner
    3. A.B. Rohrlach
    4. Christina Warinner

    Reviewed by PeerJ

    This article has 2 evaluationsAppears in 1 listLatest version Latest activity
  5. Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data

    This article has 6 authors:
    1. Bharath Nair
    2. Ismael Rodríguez Palomo
    3. Bo Markussen
    4. Carsten Wiuf
    5. Sarah Fiddyment
    6. Matthew James Collins

    Reviewed by Peer Community in Archaeology

    This article has 1 evaluationAppears in 1 listLatest version Latest activity
  6. Using macromolecular electron densities to improve the enrichment of active compounds in virtual screening

    This article has 12 authors:
    1. Wenzhi Ma
    2. Wei Zhang
    3. Yuan Le
    4. Xiaoxuan Shi
    5. Qingbo Xu
    6. Yang Xiao
    7. Yueying Dou
    8. Xiaoman Wang
    9. Wenbiao Zhou
    10. Wei Peng
    11. Hongbo Zhang
    12. Bo Huang

    Reviewed by PREreview

    This article has 1 evaluationAppears in 2 listsLatest version Latest activity
  7. IFF : Identifying key residues in intrinsically disordered regions of proteins using machine learning

    This article has 3 authors:
    1. Wen‐Lin Ho
    2. Hsuan‐Cheng Huang
    3. Jie‐rong Huang

    Reviewed by PREreview

    This article has 1 evaluationAppears in 2 listsLatest version Latest activity
  8. Data processing choices can affect findings in differential methylation analyses: an investigation using data from the LIMIT RCT

    This article has 3 authors:
    1. Jennie Louise
    2. Andrea R. Deussen
    3. Jodie M. Dodd

    Reviewed by PeerJ

    This article has 2 evaluationsAppears in 2 listsLatest version Latest activity
  9. EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma

    This article has 5 authors:
    1. Borong Shao
    2. Maria Moksnes Bjaanæs
    3. Åslaug Helland
    4. Christof Schütte
    5. Tim Conrad

    Reviewed by PREreview

    This article has 2 evaluationsAppears in 1 listLatest version Latest activity
  10. 2FAST2Q: a general-purpose sequence search and counting program for FASTQ files

    This article has 3 authors:
    1. Afonso M. Bravo
    2. Athanasios Typas
    3. Jan-Willem Veening

    Reviewed by PeerJ

    This article has 3 evaluationsAppears in 2 listsLatest version Latest activity
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