Volumetric Flow Imaging Microscopy to Enhance Particle Characterization

Flow imaging microscopy (FIM) is an important technology for high-throughput characterization of microscopic particles and microorganisms. However, conventional FIM relies on single-plane imaging (SPI), resulting in out-of-focus particles, reduced measurement precision, and incomplete characterization of irregularly shaped objects extending along the z-axis. To address these limitations, a volumetric flow imaging (VFI) framework was developed and implemented on the portable ARTiMiS platform. This approach captures multiple frames along the z-axis and extracts the highest fidelity image for each particle, which can also be used for single image generation with all particles in focus (i.e., all in focus image) and for three-dimensional reconstruction of irregularly shaped objects. Benchmarking VFI with microspheres, live cells ( Chlorella vulgaris ), and filamentous cyanobacteria demonstrated increased fraction of particles in focus, reduced variability in particle size measurement, and increased resolvability of elongated particles in comparison to conventional SPI on commercially available FIM technologies. For C. vulgaris , VFI-derived size distributions closely matched curated FlowCam measurements without requiring post-processing to exclude out-of-focus particles. All-in-focus image reconstruction enabled simultaneous visualization of particles distributed across multiple depths and consistently resolved a greater proportion of filamentous structures as compared to SPI. For Aphanizomenon sp., Dolichospermum sp., and Planktothrix agardhii , the SPI approach captured only 84%, 61%, and 58%, respectively, of the total filament length resolved by AIF reconstruction. Beyond image-based characterization, VFI enabled estimation of dynamic particle properties such as sinking velocity and mass density. Application of this framework to C. vulgaris cultures revealed distinct mass-density trajectories under nitrogen-replete and nitrogen-deplete conditions, with cell mass density increasing over time under nitrogen-replete conditions and decreasing under nitrogen deprivation. Collectively, these results establish VFI as a next-generation framework for FIM that expands its analytical capabilities beyond conventional morphometric characterization and provides new opportunities for single-cell-enabled environmental monitoring and biomanufacturing.