In vivo reconstruction of Duvernoy’s postmortem vasculature images

Non-invasive measurement of the human brain’s angioarchitecture is critical for understanding the basis of functional neuroimaging signals, diagnosing cerebrovascular diseases, and tracking neurodegeneration. Ultra-high-field magnetic resonance imaging (MRI) has achieved mesoscopic ( < 0.5 mm) imaging of angioarchitecture, revealing fine vascular details that were previously inaccessible in vivo. However, current mesoscopic MRI methods for imaging angioarchitecture face two major limitations. First, acquisition times are prohibitively long—often exceeding 40 minutes—making integration into everyday clinical practice and research projects impractical. Second, even with data successfully acquired, conventional data visualization methods—such as 2D slice browsing and 3D vessel segmentation renders—are rudimentary and have limited effectiveness for navigating and interpreting the complex vascular network. In this paper, we present a fast whole-brain MRI protocol that provides robust images of the brain’s venous network at 0.35 mm resolution in under seven minutes. Additionally, we introduce novel data processing and visualization techniques that enable identification of specific vessel types and more informative navigation of the complex vascular network. We demonstrate that, with these advancements, we can reproduce, in vivo and without intravenous contrast application, the seminal postmortem vasculature images of Duvernoy and Vannson (1999). Furthermore, leveraging the ability for MRI to cover the entire brain, we achieve, for the first time, whole-brain intracortical mesoscopic vein maps in humans. Our acquisition and post-processing methods lay the groundwork for detailed examination of vascular organization across individuals, brain regions, and cortical layers. More generally, these methods make mesoscopic imaging of angioarchitecture viable for broad neuroscientific and clinical applications.