Impacts of perR on oxygen sensitivity, gene expression, and murine infection in Clostridioides difficile 630Δ erm

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Abstract

Clostridioides difficile infection (CDI), characterized by colitis and diarrhea, afflicts approximately half a million people in the United States every year, burdening both individuals and the healthcare system. C. difficile 630Δ erm is an erythromycin-sensitive variant of the clinical isolate C. difficile 630 and is commonly used in the C. difficile research community due to its genetic tractability. 630Δ erm possesses a point mutation in perR , an autoregulated transcriptional repressor that regulates oxidative stress resistance genes. This point mutation results in a constitutively de-repressed PerR operon in 630Δ erm . To address the impacts of perR on phenotypes relevant for oxygen tolerance and relevant to a murine model of CDI, we corrected the point mutant to restore PerR function in 630Δ erm (herein, 630Δ erm perR WT ). We demonstrate that there is no difference in growth between 630Δ erm and a 630Δ erm perR WT under anaerobic conditions or when exposed to concentrations of O 2 that mimic those found near the surface of the colonic epithelium. However, 630Δ erm perR WT is more sensitive to ambient oxygen than 630Δ erm , which coincides with alterations in expression of a variety of perR -dependent and perR -independent genes. Finally, we show that 630Δ erm and 630Δ erm perR WT do not differ in their ability to infect and cause disease in a well-established murine model of CDI. Together, these data support the hypothesis that the perR mutation in 630Δ erm arose as a result of exposure to ambient oxygen and that the perR mutation in 630Δ erm is unlikely to impact CDI-relevant phenotypes in laboratory studies.

Importance

Clostridioides difficile is a diarrheal pathogen and a major public health concern. To improve humans’ understanding of C. difficile , a variety of C. difficile isolates are used in research, including C. difficile 630Δ erm . 630Δ erm is a derivative of the clinical isolate 630 and is commonly studied because it is genetically manipulable. Previous work showed that a mutation in perR in 630Δ erm results in a dysregulated oxidative stress response, but no work has been done to characterize perR -dependent effects on the transcriptome or to determine impacts of perR during infection. Here, we identify transcriptomic differences between 630Δ erm and 630Δ erm perR WT exposed to ambient oxygen and demonstrate that there is no strain-based difference in burdens in murine C. difficile infection.

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