Evaluated articles

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Genome assembly of the deep-sea coral Lophelia pertusa

This article has 2 authors:
1. Santiago Herrera
2. Erik E. Cordes
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Feb 27, 2023Latest activity Mar 29, 2023
The first genome assembly of the amphibian nematode parasite ( Aplectana chamaeleonis )

This article has 4 authors:
1. Lei Han
2. Tianlu Liu
3. Fengping He
4. Zhijun Hou
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Mar 23, 2023Latest activity Mar 29, 2023
PhysiCOOL: A generalized framework for model Calibration and Optimization Of modeLing projects

This article has 5 authors:
1. Inês G. Gonçalves
2. David A. Hormuth
3. Sandhya Prabhakaran
4. Caleb M. Phillips
5. José Manuel García-Aznar
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Feb 13, 2023Latest activity Mar 1, 2023
Improvements to the Gulf Pipefish Syngnathus scovelli Genome

This article has 10 authors:
1. B Ramesh
2. CM Small
3. H Healey
4. B Johnson
5. E Barker
6. M Currey
7. S Bassham
8. M Myers
9. WA Cresko
10. AG Jones
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Jan 24, 2023Latest activity Mar 1, 2023
Nanopore-based enrichment of antimicrobial resistance genes – a case-based study

This article has 6 authors:
1. Adrian Viehweger
2. Mike Marquet
3. Martin Hölzer
4. Nadine Dietze
5. Mathias W. Pletz
6. Christian Brandt
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Jan 25, 2023Latest activity Jan 25, 2023
The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)

This article has 9 authors:
1. Audrey J. Majeske
2. Alejandro J. Mercado Capote
3. Aleksey Komissarov
4. Anna Bogdanova
5. Nikolaos V. Schizas
6. Stephanie O. Castro Márquez
7. Kenneth Hilkert
8. Walter Wolfsberger
9. Tarás K. Oleksyk
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Nov 22, 2022Latest activity Nov 27, 2022
PhysiPKPD: A pharmacokinetics and pharmacodynamics module for PhysiCell

This article has 7 authors:
1. Daniel Bergman
2. Lauren Marazzi
3. Mukti Chowkwale
4. Deepa Maheshvare M
5. Supriya Bidanta
6. Tarunendu Mapder
7. Jialun Li
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Sep 15, 2022Latest activity Nov 10, 2022
A highly contiguous, scaffold-level nuclear genome assembly for the fever tree (Cinchona pubescens Vahl) as a novel resource for Rubiaceae research

This article has 12 authors:
1. Nataly Allasi Canales
2. Oscar A. Pérez-Escobar
3. Robyn F. Powell
4. Mats Töpel
5. Catherine Kidner
6. Mark Nesbitt
7. Carla Maldonado
8. Christopher J. Barnes
9. Nina Rønsted
10. Natalia A. S. Przelomska
11. Ilia J. Leitch
12. Alexandre Antonelli
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Oct 6, 2022Latest activity Oct 8, 2022
svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data

This article has 4 authors:
1. Ruining Dong
2. Daniel Cameron
3. Justin Bedo
4. Anthony T. Papenfuss
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Oct 5, 2022Latest activity Oct 8, 2022
A phased, chromosome-scale genome of ‘Honeycrisp’ apple (Malus domestica)

This article has 8 authors:
1. Awais Khan
2. Sarah B. Carey
3. Alicia Serrano
4. Huiting Zhang
5. Heidi Hargarten
6. Haley Hale
7. Alex Harkess
8. Loren Honaas
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Sep 19, 2022Latest activity Oct 7, 2022
Sex-based de novo transcriptome assemblies of the parasitoid wasp Encarsia suzannae, a host of the manipulative heritable symbiont Cardinium hertigii

This article has 7 authors:
1. Dylan L. Schultz
2. Evelyne Selberherr
3. Corinne M. Stouthamer
4. Matthew R. Doremus
5. Suzanne E. Kelly
6. Martha S. Hunter
7. Stephan Schmitz-Esser
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Sep 2, 2022Latest activity Sep 4, 2022
The genome of a giant (trevally): Caranx ignobilis

This article has 5 authors:
1. Brandon D. Pickett
2. Jessica R. Glass
3. Timothy P. Johnson
4. Perry G. Ridge
5. John S. K. Kauwe
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Aug 30, 2022Latest activity Sep 4, 2022
First De novo whole genome sequencing and assembly of mutant Dendrobium hybrid cultivar ‘Emma White’

This article has 5 authors:
1. Rubina Sherpa
2. Ramgopal Devadas
3. Penna Suprasanna
4. Sadashiv Narayan Bolbhat
5. Tukaram Dayaram Nikam
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Aug 9, 2022Latest activity Aug 9, 2022
The genome of the mustard hill coral, Porites astreoides

This article has 2 authors:
1. Kevin H. Wong
2. Hollie M. Putnam
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Jul 29, 2022Latest activity Aug 8, 2022
Long-read HiFi sequencing correctly assembles repetitive heavy fibroin silk genes in new moth and caddisfly genomes

This article has 16 authors:
1. Akito Y. Kawahara
2. Caroline G. Storer
3. Amanda Markee
4. Jacqueline Heckenhauer
5. Ashlyn Powell
6. David Plotkin
7. Scott Hotaling
8. Timothy P. Cleland
9. Rebecca B. Dikow
10. Torsten Dikow
11. Ryoichi B. Kuranishi
12. Rebeccah Messcher
13. Steffen U. Pauls
14. Russell J. Stewart
15. Koji Tojo
16. Paul B. Frandsen
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Jun 30, 2022Latest activity Jul 22, 2022
A chromosome-level genome assembly and annotation of the maize elite breeding line Dan340

This article has 13 authors:
1. Yikun Zhao
2. Yuancong Wang
3. De Ma
4. Guang Feng
5. Yongxue Huo
6. Zhihao Liu
7. Ling Zhou
8. Yunlong Zhang
9. Liwen Xu
10. Liang Wang
11. Han Zhao
12. Jiuran Zhao
13. Fengge Wang
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Jun 14, 2022Latest activity Jun 21, 2022
The Lithuanian reference genome LT1 - a human de novo genome assembly with short and long read sequence and Hi-C data

This article has 10 authors:
1. Hui-Su Kim
2. Asta Blazyte
3. Sungwon Jeon
4. Changhan Yoon
5. Yeonkyung Kim
6. Changjae Kim
7. Dan Bolser
8. Ji-Hye Ahn
9. Jeremy S. Edwards
10. Jong Bhak
Reviewed by GigaByte

This article has 2 evaluationsAppears in 1 listLatest version Apr 5, 2021Latest activity Jun 21, 2022
Annotation of Hox cluster and Hox cofactor genes in the Asian citrus psyllid, Diaphorina citri, reveals novel features

This article has 8 authors:
1. Teresa D. Shippy
2. Prashant S. Hosmani
3. Mirella Flores-Gonzalez
4. Lukas A. Mueller
5. Wayne B. Hunter
6. Susan J. Brown
7. Tom D’Elia
8. Surya Saha
Reviewed by GigaByte

This article has 1 evaluationAppears in 2 listsLatest version Apr 8, 2022Latest activity May 31, 2022
Annotation of putative circadian rhythm-associated genes in Diaphorina citri (Hemiptera: Liviidae)

This article has 26 authors:
1. Max Reynolds
2. Lucas de Oliveira
3. Chad Vosburg
4. Thomson Paris
5. Crissy Massimino
6. Jordan Norus
7. Yasmin Ortiz
8. Michelle Espino
9. Nina Davis
10. Ron Masse
11. Alan Neiman
12. Rachel Holcomb
13. Kylie Gervais
14. Melissa Kemp
15. Maria Hoang
16. Teresa D. Shippy
17. Prashant S. Hosmani
18. Mirella Flores-Gonzalez
19. Kirsten Pelz-Stelinski
20. Jawwad A. Qureshi
21. Lukas A. Mueller
22. Wayne B. Hunter
23. Joshua B. Benoit
24. Susan J. Brown
25. Tom D’Elia
26. Surya Saha
Reviewed by GigaByte

This article has 1 evaluationAppears in 1 listLatest version Apr 1, 2022Latest activity May 31, 2022
Genome assembly of the numbat (Myrmecobius fasciatus), the only termitivorous marsupial

This article has 6 authors:
1. Emma Peel
2. Luke Silver
3. Parice Brandies
4. Takashi Hayakawa
5. Katherine Belov
6. Carolyn J. Hogg
Reviewed by GigaByte

This article has 2 evaluationsAppears in 1 listLatest version Mar 17, 2022Latest activity May 31, 2022

Evaluated articles

Genome assembly of the deep-sea coral Lophelia pertusa

The first genome assembly of the amphibian nematode parasite ( Aplectana chamaeleonis )

PhysiCOOL: A generalized framework for model Calibration and Optimization Of modeLing projects

Improvements to the Gulf Pipefish Syngnathus scovelli Genome

Nanopore-based enrichment of antimicrobial resistance genes – a case-based study

The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)

PhysiPKPD: A pharmacokinetics and pharmacodynamics module for PhysiCell

A highly contiguous, scaffold-level nuclear genome assembly for the fever tree (Cinchona pubescens Vahl) as a novel resource for Rubiaceae research

svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data

A phased, chromosome-scale genome of ‘Honeycrisp’ apple (Malus domestica)

Sex-based de novo transcriptome assemblies of the parasitoid wasp Encarsia suzannae, a host of the manipulative heritable symbiont Cardinium hertigii

The genome of a giant (trevally): Caranx ignobilis

First De novo whole genome sequencing and assembly of mutant Dendrobium hybrid cultivar ‘Emma White’

The genome of the mustard hill coral, Porites astreoides

Long-read HiFi sequencing correctly assembles repetitive heavy fibroin silk genes in new moth and caddisfly genomes

A chromosome-level genome assembly and annotation of the maize elite breeding line Dan340

The Lithuanian reference genome LT1 - a human de novo genome assembly with short and long read sequence and Hi-C data

Annotation of Hox cluster and Hox cofactor genes in the Asian citrus psyllid, Diaphorina citri, reveals novel features

Annotation of putative circadian rhythm-associated genes in Diaphorina citri (Hemiptera: Liviidae)

Genome assembly of the numbat (Myrmecobius fasciatus), the only termitivorous marsupial