1. Phylodynamic insights on the early spread of the COVID-19 pandemic and the efficacy of intervention measures

    This article has 4 authors:
    1. Jiansi Gao
    2. Michael R. May
    3. Bruce Rannala
    4. Brian R. Moore

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  2. Following the Trail of One Million Genomes: Footprints of SARS-CoV-2 Adaptation to Humans

    This article has 9 authors:
    1. Saymon Akther
    2. Edgaras Bezrucenkovas
    3. Li Li
    4. Brian Sulkow
    5. Lia Di
    6. Desiree Pante
    7. Che L. Martin
    8. Benjamin J. Luft
    9. Weigang Qiu

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  3. On Classification and Taxonomy of Coronaviruses (Riboviria, Nidovirales, Coronaviridae) with Special Focus on Severe Acute Respiratory Syndrome-Related Coronavirus 2 (SARS-CoV-2)

    This article has 7 authors:
    1. E.V. Mavrodiev
    2. M.L. Tursky
    3. N.E. Mavrodiev
    4. L. Schroder
    5. A.P. Laktionov
    6. M.C. Ebach
    7. D.M. Williams

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  4. Ongoing Recombination in SARS-CoV-2 Revealed through Genealogical Reconstruction

    This article has 3 authors:
    1. Anastasia Ignatieva
    2. Jotun Hein
    3. Paul A Jenkins

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  5. Comprehensive annotations of the mutational spectra of SARS‐CoV‐2 spike protein: a fast and accurate pipeline

    This article has 10 authors:
    1. Mohammad Shaminur Rahman
    2. Mohammad Rafiul Islam
    3. Mohammad Nazmul Hoque
    4. Abu Sayed Mohammad Rubayet Ul Alam
    5. Masuda Akther
    6. Joynob Akter Puspo
    7. Salma Akter
    8. Azraf Anwar
    9. Munawar Sultana
    10. Mohammad Anwar Hossain

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  6. Mutation Rates and Selection on Synonymous Mutations in SARS-CoV-2

    This article has 6 authors:
    1. Nicola De Maio
    2. Conor R Walker
    3. Yatish Turakhia
    4. Robert Lanfear
    5. Russell Corbett-Detig
    6. Nick Goldman

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  7. Phylogenetic Analyses of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) B.1.1.7 Lineage Suggest a Single Origin Followed by Multiple Exportation Events Versus Convergent Evolution

    This article has 2 authors:
    1. A Chaillon
    2. D M Smith

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  8. Exploring the Natural Origins of SARS-CoV-2 in the Light of Recombination

    This article has 10 authors:
    1. Spyros Lytras
    2. Joseph Hughes
    3. Darren Martin
    4. Phillip Swanepoel
    5. Arné de Klerk
    6. Rentia Lourens
    7. Sergei L Kosakovsky Pond
    8. Wei Xia
    9. Xiaowei Jiang
    10. David L Robertson

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  9. Decomposing the sources of SARS-CoV-2 fitness variation in the United States

    This article has 3 authors:
    1. Lenora Kepler
    2. Marco Hamins-Puertolas
    3. David A Rasmussen

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  10. Using image-based haplotype alignments to map global adaptation of SARS-CoV-2

    This article has 3 authors:
    1. Tom W. Ouellette
    2. Jim Shaw
    3. Philip Awadalla

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