Multi-scale biophysical modeling of fungal colony growth

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Abstract

Fungal colony growth is shaped by the fundamental physical operating principles of hyphal elongation, branching, and anastomosis, which collectively organize into macroscopic foraging networks. While sophisticated 3D models utilizing adaptive mesh refinement (AMR) on high-performance computing architectures can explicitly capture these discrete cellular mechanics, their immense computational cost prevents their integration into predictive ecosystem simulators. Here, building upon the Biological Modeling and interface eXchange (BMX) framework, we combine high-fidelity discrete hyphal mechanics with an analytically tractable, stochastic traveling-wave surrogate (sBARE) to provide multiscale simulations of fungal colonies at a fraction of the computational cost. By leveraging demographic fluctuations at the advancing front, our framework uniquely resolves macroscopic parameter degeneracies, separating the directed forward drift of leading tips from their effective diffusion to capture the macroscopic signature of negative autotropism in 3D networks. Simulations reproduce experimentally observed traveling wave profiles and confirm that interior network density under replete conditions emerges as an invariant self-regulated by fusion. Furthermore, global sensitivity analysis reveals that expansion speed and network density are governed by largely disjoint microscopic parameters. We demonstrate that because the physics of hyphal growth permit networks that are both exceptionally fast and dense, the empirical trade-off between sparse ‘explorer’ and dense ‘exploiter’ strategies observed in nature is not a strict mechanical constraint, pointing instead to metabolic limits on local growth rules. Our mathematically tractable approach bridges exascale-level cellular mechanics with macroscopic wave dynamics, enabling the integration of trait-driven advective fluxes and carrying capacities into the spatial transport and reaction network schemes of large-scale biogeochemical models.

Author summary

Fungi forage by extending microscopic tubular cells called hyphae, which branch and fuse to form vast networks. A major challenge in biophysics is understanding how these localized rules coordinate to drive a colony expanding like a traveling wave. While supercomputers can simulate these cellular mechanics in high detail, their massive computational cost prevents their use at larger scales. To bridge this gap, we developed a mathematical framework that translates these heavyweight simulations into fast-running, simplified reaction-diffusion equations. By analyzing the “noisy” random wandering of the growing edge, we successfully separated the directed forward growth of tips from their random exploratory movement. Our simulations confirmed that, rather than passively running out of resources, fungi actively control their own network density through fusion, acting as an intrinsic biological population cap. Furthermore, we found that a colony’s expansion speed and its interior density are controlled by completely different cellular traits. Because physical rules allow fungi to theoretically be both fast-growing and dense, the trade-offs we observe in nature—where fungi are typically forced to be either sparse “explorers” or dense “exploiters”—must be driven by metabolic energy limits rather than mechanical constraints. Ultimately, our equations provide a mathematically simple way to incorporate realistic, trait-driven fungal growth into predictive ecosystem simulators.

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  1. www.biorxiv.org/content/10.6...

  2. Multi-scale biophysical modeling of fungal colony growth https://www.biorxiv.org/content/10.64898/2026.11.05.764668v1

  3. Multi-scale biophysical modeling of fungal colony growth https://www.biorxiv.org/content/10.64898/2026.11.05.764668v1