ConfUSIus: an accessible and scalable toolkit for functional ultrasound imaging analysis

  1. Samuel Le Meur-Diebolt
  2. Felipe Cybis Pereira
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Abstract

Functional ultrasound imaging (fUSI) maps brainwide hemodynamics at high resolution, yet analysis requires expert knowledge as pipelines remain fragmented across laboratories. We introduce ConfUSIus, an open-source Python package and graphical interface for accessible, scalable, and reproducible fUSI analysis. Its common data model unifies heterogeneous fUSI recordings across beamformed IQ processing, motion correction, registration, denoising, and statistical analysis. ConfUSIus lowers barriers and facilitates method development, comparison, and sharing.

Article activity feed

  1. Mentioned by @confusius.tools on Bluesky

    🧠 Our ConfUSIus preprint is out! We introduce an open-source Python package and @napari.org GUI for accessible, scalable and reproducible functional ultrasound imaging (fUSI) analysis. From beamformed IQ data to statistical analysis. 🧵 www.biorxiv.org/content/10.6...

  2. Mentioned by @biorxivpreprint.bsky.social on Bluesky

    ConfUSIus: an accessible and scalable toolkit for functional ultrasound imaging analysis https://www.biorxiv.org/content/10.64898/2026.10.27.762250v1

  3. Mentioned by @biorxiv-neursci.bsky.social on Bluesky

    ConfUSIus: an accessible and scalable toolkit for functional ultrasound imaging analysis https://www.biorxiv.org/content/10.64898/2026.10.27.762250v1

  4. Version published to 10.64898/2026.10.27.762250v1 on bioRxiv