Predicting taxon-specific benthic cyanobacterial mat cover and anatoxin concentrations in northern California rivers

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Abstract

I.

Ecological forecasts often rely on established relationships between the ecological process of interest and predictor variables that are more easily measured. Proliferations of benthic (i.e., bottom-dwelling) cyanobacteria have been increasingly observed in rivers globally and are an emerging ecological forecasting issue as they pose a public health threat due to the production of potent neurotoxins known as anatoxins. Controls on these benthic cyanobacteria are poorly understood, thus predicting or forecasting their extent and anatoxin production is a significant challenge. Here, we measured benthic cyanobacterial cover and anatoxin concentrations for two common taxa associated with anatoxins ( Microcoleus and Anabaena ) at biweekly to weekly intervals during June to September in 2022 and 2023 in three northern Californian rivers. We then built predictive models to test how incorporation of a biotic predictor (river reach-scale gross primary productivity [GPP]) affected predictive accuracy in addition to widely measured abiotic predictors (i.e., nutrients, discharge, and temperature). Temporal patterns in taxon-specific benthic cyanobacterial cover and anatoxin concentrations were highly variable among rivers and between taxa. While Microcoleus cover peaked in rivers during periods of relatively low GPP, there were no clear relationships between GPP and Anabaena cover nor either taxon’s anatoxin concentrations among rivers. Among multiple reaches sampled weekly in the South Fork Eel River, magnitudes of taxon-specific benthic cyanobacterial cover and anatoxin concentrations differed, but the timing of peak taxon-specific cover and anatoxin concentrations were generally consistent. Furthermore, Anabaena displayed a “hysteresis” relationship where increases in cover were followed by increases in anatoxin concentrations while Microcoleus lacked such relationship. While incorporating GPP as a covariate improved our predictions of Anabaena cover, we had more success predicting Microcoleus cover than Anabaena cover due to its strong negative relationship with discharge. In contrast, our models predicting Anabaena anatoxin concentrations outperformed those predicting Microcoleus anatoxin concentrations due to the “hysteresis” relationship between Anabaena cover and anatoxins. Overall, our predictive modeling results highlight the application of ecological forecasting for benthic cyanobacterial cover and anatoxin concentrations in rivers and demonstrate the importance of incorporating taxon-specific predictors into future forecasts of benthic cyanobacteria.

Open Research Statement

Data (Zabrecky et al. 2025) collected for this project are available at the Environmental Data Initiative at https://doi.org/10.6073/pasta/dd858a8903f9d22ec7f4ef03584f5bd5 . Additional data were used from the U.S. Geological Survey Water Data for the Nation (U.S. Geological Survey 2025), Global Land Data Assimilation System (Rodell et al. 2024), North American Land Data Assimilation System (Xia et al. 2012), and from the Karuk Tribe with consent. The data from the Karuk Tribe are not currently publicly available. Contact the Tribe for further information. Code is currently publicly available at https://github.com/jzabrecky/ATX-synchrony-norcal and will be deposited on Zenodo upon article acceptance.

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