Bio-Babel: autonomous cross-language reconstruction of agent-ready computational biology ecosystems
Listed in
This article is not in any list yet, why not save it to one of your lists.Abstract
Scientific software is often locked in its source language, callable from others but not natively extensible or built upon. We present Bio-Babel ( biobabel.stanford.edu ), an autonomous framework that rebuilds software natively in target ecosystems and makes it agent-callable, shipping each package with an agent-readable contract of its usage. Reconstructing a hierarchical, interdependent R-to-Python single-cell stack, Bio-Babel reproduced the originals faithfully and revealed pancreatic differentiation dynamic defects under graded SWI/SNF loss.
