Biochemical and Binding Characterization of a Riboflavin Analogue Tethered to Biotin

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Abstract

The binding affinities of a chimeric analog of a riboflavin derivative linked to biotin, ( 6-(7 , 8-dimethyl-2 , 4-dioxo-3 , 4-dihydrobenzo[ g ]pteridin-10(2 H )-yl)hexyl 5-((3a S , 4 S , 6a R )-2-oxohexahydro-1 H -thieno[3 , 4- d ]imidazol-4-yl)pentanoate) , referred to as C6-Rf-biotin-tag, to the riboflavin binding retain or streptavidin are in the μM range, 1.29 ± 0.277 and 3.00 ± 0.459, respectively. These values suggest that C6-Rf-biotin-tag has potential applications in diagnostic assay and labelling target flavin binding proteins. The C6-Rf-biotin-tag which was characterized with respect to physical and biochemical properties retains UV/Vis spectroscopic and fluorescence behavior similar to riboflavin.

Highlights

  • A novel molecule of a riboflavin derivative linked to biotin was tested for protein binding

  • Fluorescence of the chimeric molecule was quenched upon binding to riboflavin binding protein

  • Riboflavin binding protein or streptavidin bind the chimeric molecule

  • Plasmon waveguide resonance spectroscopy was used to determine the binding affinities

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