No-code microbial growth phenotyping with GUIbiont

Read the full article See related articles

Listed in

This article is not in any list yet, why not save it to one of your lists.
Log in to save this article

Abstract

Microbial growth screens generate thousands of curves, but cross-experiment comparison and mapping growth phenotypes to genotypes or environments routinely require custom code. GUIbiont is a no-code browser application for quality control, curve fitting, clustering and metadata-linked analysis with machine learning techniques. Interactive sessions export as Julia scripts, allowing users to reproduce or extend browser analyses. Validated across 3,885 E. coli deletion strains and 13,608 defined-media curves, GUIbiont recovered known auxotrophic and nutrient-dependent phenotypes.

Article activity feed