DOME Copilot: Making transparency and reproducibility for artificial intelligence methods simple

  1. Gavin Farrell
  2. Omar Abdelghani Attafi
  3. Styliani-Christina Fragkouli
  4. Ignacio Heredia
  5. Saul Fernández Tobías
  6. Melissa Harrison
  7. Henning Hermjakob
  8. Matt Jeffryes
  9. Marta Obregón Ruiz
  10. Matt Pearce
  11. Nikos Pechlivanis
  12. Alvaro López García
  13. Fotis Psomopoulos
  14. Silvio C.E. Tosatto
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Abstract

Unprecedented breakthroughs are being made in life science research through the application of artificial intelligence (AI). However, adherence to method reporting guidelines is necessary to support their reusability and reproducibility. The DOME Copilot solution extracts structured reports of AI methods using a large language model to help interpret manuscripts. It is a fast and efficient resource capable of scaling to annotate the corpus of global AI literature, unlocking value and trust in published methods.

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  1. Version published to 10.64898/2026.04.16.718888 on bioRxiv