Genomic Epidemiology of Early SARS-CoV-2 Transmission Dynamics, Gujarat, India
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SciScore for 10.1101/2021.08.31.21262680: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
NIH rigor criteria are not applicable to paper type.Table 2: Resources
Software and Algorithms Sentences Resources We used a three-state asymmetric discrete trait analysis (DTA) model implemented in BEAST v1.1028 to infer the ancestral node locations (Gujarat, India, or global) using an empirical tree distribution comprising 500 time-calibrated trees sampled from the posterior tree distributions estimated above. BEASTsuggested: (BEAST, RRID:SCR_010228)Results from OddPub: Thank you for sharing your code and data.
Results from LimitationRecognizer: We detected the following sentences addressing limitations in the study:Notably, we show the importance of international connectedness and intra-regional …
SciScore for 10.1101/2021.08.31.21262680: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
NIH rigor criteria are not applicable to paper type.Table 2: Resources
Software and Algorithms Sentences Resources We used a three-state asymmetric discrete trait analysis (DTA) model implemented in BEAST v1.1028 to infer the ancestral node locations (Gujarat, India, or global) using an empirical tree distribution comprising 500 time-calibrated trees sampled from the posterior tree distributions estimated above. BEASTsuggested: (BEAST, RRID:SCR_010228)Results from OddPub: Thank you for sharing your code and data.
Results from LimitationRecognizer: We detected the following sentences addressing limitations in the study:Notably, we show the importance of international connectedness and intra-regional demographics in shaping virus lineage dynamics in India, and we highlight the limitations of investigating virus movement and origins due to the comparatively low genomic surveillance in this region. All of these factors will need to be taken into consideration when evaluating the emergence and epidemiology of the delta variant.
Results from TrialIdentifier: No clinical trial numbers were referenced.
Results from Barzooka: We did not find any issues relating to the usage of bar graphs.
Results from JetFighter: We did not find any issues relating to colormaps.
Results from rtransparent:- Thank you for including a conflict of interest statement. Authors are encouraged to include this statement when submitting to a journal.
- Thank you for including a funding statement. Authors are encouraged to include this statement when submitting to a journal.
- No protocol registration statement was detected.
Results from scite Reference Check: We found no unreliable references.
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