Genomic Sequencing of SARS-CoV-2 E484K Variant B.1.243.1, Arizona, USA
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SciScore for 10.1101/2021.03.26.21254367: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
Institutional Review Board Statement IRB: This study was approved by the Arizona State University Institutional Review Board. Randomization Study population: As part of SARS-CoV-2 genomic surveillance efforts, saliva samples submitted for COVID-19 testing to the Arizona State University’s Biodesign Clinical Testing Laboratory (ABCTL) that tested positive (TaqPath COVID-19 Combo Kit, Applied Biosystems) were randomly selected for next-generation sequencing24. Blinding not detected. Power Analysis not detected. Sex as a biological variable not detected. Table 2: Resources
Software and Algorithms Sentences Resources Sequence alignments were performed with MAFFT (version 7.471)28 and variant calling using … SciScore for 10.1101/2021.03.26.21254367: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
Institutional Review Board Statement IRB: This study was approved by the Arizona State University Institutional Review Board. Randomization Study population: As part of SARS-CoV-2 genomic surveillance efforts, saliva samples submitted for COVID-19 testing to the Arizona State University’s Biodesign Clinical Testing Laboratory (ABCTL) that tested positive (TaqPath COVID-19 Combo Kit, Applied Biosystems) were randomly selected for next-generation sequencing24. Blinding not detected. Power Analysis not detected. Sex as a biological variable not detected. Table 2: Resources
Software and Algorithms Sentences Resources Sequence alignments were performed with MAFFT (version 7.471)28 and variant calling using Geneious Prime (version 2021). MAFFTsuggested: (MAFFT, RRID:SCR_011811)Results from OddPub: We did not detect open data. We also did not detect open code. Researchers are encouraged to share open data when possible (see Nature blog).
Results from LimitationRecognizer: An explicit section about the limitations of the techniques employed in this study was not found. We encourage authors to address study limitations.Results from TrialIdentifier: No clinical trial numbers were referenced.
Results from Barzooka: We did not find any issues relating to the usage of bar graphs.
Results from JetFighter: We did not find any issues relating to colormaps.
Results from rtransparent:- Thank you for including a conflict of interest statement. Authors are encouraged to include this statement when submitting to a journal.
- Thank you for including a funding statement. Authors are encouraged to include this statement when submitting to a journal.
- Thank you for including a protocol registration statement.
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