An explanatory audit of constraints on the genetic code's redundancy ratio: five candidate pathways
Discuss this preprint
Start a discussion What are Sciety discussions?Listed in
This article is not in any list yet, why not save it to one of your lists.Abstract
The standard genetic code (SGC) distributes 64 codons across 23 signals (20 amino acids and 3 stops), giving an average redundancy ratio r = 64/23 ≈ 2.78. Rather than proposing a further explanation of this value, I ask which existing explanations genuinely constrain it and which merely remain compatible with it. Five candidate pathways are subjected to an explanatory audit: comparative genomics of natural variant codes (P1), information-theoretic channel capacity (P2), translation-error mutation load (P3), tRNA codon–anticodon discrimination capacity (P4), and proteome viability under reduced alphabets (P5). The pathways are found to operate at different epistemic levels. Only P1 yields a narrow empirical window, r ∈ [2.67, 3.05] across twenty-four fully characterised NCBI codes (widening to 3.20 once context-dependent ciliate codes are admitted), and even this is genealogically caveated: the codes are perturbations of a single ancestral attractor, not independent samples. P4 supplies the only binding theoretical constraint, a sharp but loose floor r ≥ 1.83 under standard cytoplasmic wobble. P5 is recast as an informal sanity check, because its per-class minima are calibrated against natural proteomes. P2 and P3 are nonbinding at biological parameter values. The contribution is methodological: an ablation showing that, of five persistent explanations, only comparative genomics carries evidential weight, while the theoretical pathways either fail to bind, fix only a weak floor, or reproduce calibration against the observed value.