Unlocking Hidden Sources of Resistance to Ascochyta Blight in Moderately Resistant Chickpea Genotypes

Ascochyta blight, caused by Ascochyta rabiei , is a major threat to global chickpea ( Cicer arietinum L.) production, significantly reducing yield under favorable conditions. This study aimed to characterize the resistance responses of nine chickpea genotypes, previously classified as moderately resistant, by subjecting them to enhanced disease pressure. Phenotypic evaluation, including the area under the disease progress curve (AUDPC) and severity scoring was carried out. To explore the genetic basis of resistance, molecular markers associated with quantitative trait loci (QTLs) for resistance were analyzed. The results revealed significant variability among the MR genotypes, with three genotypes FLIP06-86C, FLIP07-35C, and FLIP03-100C outperforming the resistant control. The results from hierarchical clustering (UPGMA), principal component analysis (PCA), and principal coordinate analysis (PCoA) highlighted genetic substructures consistent with observed phenotypic behaviors. However, unexpected marker-phenotype associations were detected, questioning the utility of specific markers such as SCY17 and CAETR in marker-assisted selection. These findings underline the complexity of polygenic resistance to A. rabiei and emphasize the importance of integrating phenotypic screening with genetic analyses to improve the reliability of chickpea breeding programs. This work also contributes to identifying superior MR genotypes, providing valuable resources for the development of resistant cultivars.