Evolution of nasal and olfactory infection characteristics of SARS-CoV-2 variants
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SciScore for 10.1101/2022.04.12.487379: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
Ethics IRB: Human nasal explant in vitro infection: The research protocol involving human specimens was approved by the Johns Hopkins institutional review board, and all subjects provided signed informed consent.
Consent: Human nasal explant in vitro infection: The research protocol involving human specimens was approved by the Johns Hopkins institutional review board, and all subjects provided signed informed consent.
IACUC: Animal experimental procedures were approved by the Animal Care and Use Committee at the Johns Hopkins University.Sex as a biological variable 6 control (2 females and 4 males ranged from 45 to 63 years old) and 27 CRS biopsies (11 females and 16 males ranged from 25 to 76 years … SciScore for 10.1101/2022.04.12.487379: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
Ethics IRB: Human nasal explant in vitro infection: The research protocol involving human specimens was approved by the Johns Hopkins institutional review board, and all subjects provided signed informed consent.
Consent: Human nasal explant in vitro infection: The research protocol involving human specimens was approved by the Johns Hopkins institutional review board, and all subjects provided signed informed consent.
IACUC: Animal experimental procedures were approved by the Animal Care and Use Committee at the Johns Hopkins University.Sex as a biological variable 6 control (2 females and 4 males ranged from 45 to 63 years old) and 27 CRS biopsies (11 females and 16 males ranged from 25 to 76 years old) were used for detailed immunohistochemistry analysis. Randomization not detected. Blinding not detected. Power Analysis not detected. Table 2: Resources
Antibodies Sentences Resources The following primary antibodies was used: Rabbit anti-SARS-CoV-2 Nucleoprotein (1:200, Novus, NB100-56576) anti-SARS-CoV-2suggested: (Novus Cat# NB100-56576, RRID:AB_838838)Goat anti-ACE2 (1:100, R&D, AF933, for human samples), Rabbit anti-ACE2 (1:100 anti-ACE2suggested: (Novus Cat# NB100-55793, RRID:AB_837486), R&D MAB1420); Chicken anti-Vimentin (Novus NB300-223); Goat anti-Foxj1 (1:200, R&D AF3619); Mouse anti-NeuN (1:1000, BioLegend, anti-NeuNsuggested: NoneThe donkey-derived Alexa Fluor-conjugated secondary antibodies included anti-mouse 488 (A21202, Invitrogen); anti-Rat 488 (A21208, anti-mousesuggested: (Molecular Probes Cat# A-21202, RRID:AB_141607)anti-Ratsuggested: (Molecular Probes Cat# A-21208, RRID:AB_141709)Experimental Models: Organisms/Strains Sentences Resources Animal infection experiments were conducted using wildtype C57BL/6J mice, Syrian golden hamsters (HsdHan®: AURA, Envigo, Haslett MI), and hACE2 mice (B6.Cg-Tg(K18-ACE2)2Prlmn/J, JAX, Bar Harbor, Maine). C57BL/6Jsuggested: NoneB6.Cg-Tg(K18-ACE2)2Prlmn/Jsuggested: RRID:IMSR_JAX:034860)Software and Algorithms Sentences Resources Images were cut by Photoshop and assembled by Illustrator. Photoshopsuggested: (Adobe Photoshop, RRID:SCR_014199)Illustratorsuggested: (Adobe Illustrator, RRID:SCR_010279)The Seurat R package was used for subsequent analysis. Seuratsuggested: (SEURAT, RRID:SCR_007322)Data analyses were carried out using GraphPad Prism. GraphPad Prismsuggested: (GraphPad Prism, RRID:SCR_002798)Results from OddPub: We did not detect open data. We also did not detect open code. Researchers are encouraged to share open data when possible (see Nature blog).
Results from LimitationRecognizer: An explicit section about the limitations of the techniques employed in this study was not found. We encourage authors to address study limitations.Results from TrialIdentifier: No clinical trial numbers were referenced.
Results from Barzooka: We did not find any issues relating to the usage of bar graphs.
Results from JetFighter: We did not find any issues relating to colormaps.
Results from rtransparent:- Thank you for including a conflict of interest statement. Authors are encouraged to include this statement when submitting to a journal.
- Thank you for including a funding statement. Authors are encouraged to include this statement when submitting to a journal.
- No protocol registration statement was detected.
Results from scite Reference Check: We found no unreliable references.
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