Integration of Kalman filter in the epidemiological model: A robust approach to predict COVID-19 outbreak in Bangladesh

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Abstract

As one of the most densely populated countries in the world, Bangladesh has been trying to contain the impact of a pandemic like coronavirus disease 2019 (COVID-19) since March, 2020. Although government announced an array of restricted measures to slow down the diffusion in the beginning of the pandemic, the lockdown has been lifted gradually by reopening all the industries, markets and offices with a notable exception of educational institutes. As the physical geography of Bangladesh is highly variable across the largest delta, the population of different regions and their lifestyle also differ in the country. Thus, to get the real scenario of the current pandemic and a possible second wave of COVID-19 transmission across Bangladesh, it is essential to analyze the transmission dynamics over the individual districts. In this paper, we propose to integrate the Unscented Kalman Filter (UKF) with classic SIRD model to explain the epidemic evolution of individual districts in the country. We show that UKF-SIRD model results in a robust prediction of the transmission dynamics for 1–4 months. Then we apply the robust UKF-SIRD model over different regions in Bangladesh to estimates the course of the epidemic. Our analysis demonstrates that in addition to the densely populated areas, industrial areas and popular tourist spots will be in the risk of higher COVID-19 transmission if a second wave of COVID-19 occurs in the country. In the light of these outcomes, we also provide a set of suggestions to contain the future pandemic in Bangladesh.

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  1. SciScore for 10.1101/2020.10.14.20212878: (What is this?)

    Please note, not all rigor criteria are appropriate for all manuscripts.

    Table 1: Rigor

    NIH rigor criteria are not applicable to paper type.

    Table 2: Resources

    No key resources detected.


    Results from OddPub: Thank you for sharing your code and data.


    Results from LimitationRecognizer: An explicit section about the limitations of the techniques employed in this study was not found. We encourage authors to address study limitations.

    Results from TrialIdentifier: No clinical trial numbers were referenced.


    Results from Barzooka: We did not find any issues relating to the usage of bar graphs.


    Results from JetFighter: We did not find any issues relating to colormaps.


    Results from rtransparent:
    • Thank you for including a conflict of interest statement. Authors are encouraged to include this statement when submitting to a journal.
    • No funding statement was detected.
    • No protocol registration statement was detected.

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