Coding-Complete Genome Sequences of 23 SARS-CoV-2 Samples from the Philippines

  1. John Mark Velasco
  2. Piyawan Chinnawirotpisan
  3. Khajohn Joonlasak
  4. Wudtichai Manasatienkij
  5. Angkana Huang
  6. Maria Theresa Valderama
  7. Paula Corazon Diones
  8. Susie Leonardia
  9. Maria Leanor Timbol
  10. Fatima Claire Navarro
  11. Vicente Villa
  12. Henry Tabinas
  13. Domingo Chua
  14. Stefan Fernandez
  15. Anthony Jones
  16. Chonticha Klungthong

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Abstract

Here, we report the coding-complete genome sequences of 23 severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) samples from the Philippines. Sequences were obtained from nasopharyngeal and oropharyngeal swabs from COVID-19-positive patients. Mutation analysis showed the presence of the D614G mutation in the spike protein in 22 of 23 genomes.

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  1. Version published to 10.1128/mra.01031-20
  2. ScreenIT

    SciScore for 10.1101/2020.09.29.20203695: (What is this?)

    Please note, not all rigor criteria are appropriate for all manuscripts.

    Table 1: Rigor

    Institutional Review Board Statementnot detected.
    Randomizationnot detected.
    Blindingnot detected.
    Power Analysisnot detected.
    Sex as a biological variablenot detected.

    Table 2: Resources

    No key resources detected.

    Results from OddPub: Thank you for sharing your data.

    Results from LimitationRecognizer: An explicit section about the limitations of the techniques employed in this study was not found. We encourage authors to address study limitations.

    Results from TrialIdentifier: No clinical trial numbers were referenced.

    Results from Barzooka: We did not find any issues relating to the usage of bar graphs.

    Results from JetFighter: We did not find any issues relating to colormaps.

    Results from rtransparent:
    • Thank you for including a conflict of interest statement. Authors are encouraged to include this statement when submitting to a journal.
    • Thank you for including a funding statement. Authors are encouraged to include this statement when submitting to a journal.
    • No protocol registration statement was detected.

    About SciScore

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  3. Version published to 10.1101/2020.09.29.20203695v1 on medRxiv