Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State
This article has been Reviewed by the following groups
Listed in
- Evaluated articles (ScreenIT)
Abstract
Initial SARS-CoV-2 dynamics in Washington State were driven by regional interventions and introductions of variants differing in viral loads.
Article activity feed
-
-
SciScore for 10.1101/2020.09.30.20204230: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
NIH rigor criteria are not applicable to paper type.Table 2: Resources
Software and Algorithms Sentences Resources We implemented this multi tree coalescent approach as an extension to the Bayesian phylogenetics software BEAST2 (35). BEAST2suggested: (BEAST2, RRID:SCR_017307)Sequencing and analysis of samples from SCAN was approved by the institutional review board at the University of Washington (protocol STUDY00010432). SCANsuggested: ( SCAN , RRID:SCR_005185)Results from OddPub: Thank you for sharing your code and data.
Results from LimitationRecognizer: An explicit section about the limitations of the techniques employed in this study was not found. We encourage authors to address study …SciScore for 10.1101/2020.09.30.20204230: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
NIH rigor criteria are not applicable to paper type.Table 2: Resources
Software and Algorithms Sentences Resources We implemented this multi tree coalescent approach as an extension to the Bayesian phylogenetics software BEAST2 (35). BEAST2suggested: (BEAST2, RRID:SCR_017307)Sequencing and analysis of samples from SCAN was approved by the institutional review board at the University of Washington (protocol STUDY00010432). SCANsuggested: ( SCAN , RRID:SCR_005185)Results from OddPub: Thank you for sharing your code and data.
Results from LimitationRecognizer: An explicit section about the limitations of the techniques employed in this study was not found. We encourage authors to address study limitations.Results from TrialIdentifier: No clinical trial numbers were referenced.
Results from Barzooka: We found bar graphs of continuous data. We recommend replacing bar graphs with more informative graphics, as many different datasets can lead to the same bar graph. The actual data may suggest different conclusions from the summary statistics. For more information, please see Weissgerber et al (2015).
Results from JetFighter: We did not find any issues relating to colormaps.
Results from rtransparent:- Thank you for including a conflict of interest statement. Authors are encouraged to include this statement when submitting to a journal.
- Thank you for including a funding statement. Authors are encouraged to include this statement when submitting to a journal.
- No protocol registration statement was detected.
-
