Identification of cellular senescence-related gene IFNG as a potential biomarker in acute rejection after kidney transplantation via weighted gene co-expression network analysis and multiple machine learning
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Background
Kidney transplantation is the best option for the treatment of end-stage kidney disease (ESKD). Acute rejection (AR) episodes are a major determinant of renal allograft survival. Cellular senescence in the pathogenesis of allograft failure. Herein, we aimed to explore hub cellular senescence-related gene in AR after kidney transplantation.
Methods
The data used in this study was obtained from the Gene Expression Omnibus database. The hub cellular senescence-related gene was identified using WGCNA and three machine learning algorithms. The function information was analyzed using the GO and KEGG enrichment analysis. The correlation between hub gene and immune cells was calculated using ssGSEA algorithm and Pearson’s correlation analysis.
Results
A total of 31 cellular senescence-related genes were differentially expressed in the AR and stable groups. Among which, 19 genes were correlated with onset of AR after kidney transplantation. After utilizing the three machine learning algorithms, IFNG was identified as the hub cellular senescence-related gene. IFNG was highly expressed in AR samples, and it could better distinguish between stable individuals and AR patients after kidney transplantation. Moreover, the expression of IFNG was closely correlated with immune cell infiltration and function. IFNG expression was associated with multiple drugs. Finally, we found that IFNG was high expressed in kidney tissues of AR in allogeneic kidney transplant mice
Conclusions
Our study revealed that cellular senescence-related gene IFNG might be a potential biomarker AR after kidney transplantation.
