Vizitig: a pangenome and pantranscriptome explorer

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Abstract

Vizitig is the first platform for real-time exploration and querying of DNA and RNA sequence graphs across many samples, unifying visualization, metadata, and flexible search. It integrates raw and reference-based data, handles complex variation, and provides a human-readable query language with scalable graph loading. Vizitig enables fast, reproducible analysis in both pangenomics and pantranscriptomics.

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