Reproducible Generative AI Evaluation for Healthcare: A Clinician-in-the-Loop Approach

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Abstract

Objective

To develop and apply a reproducible methodology for evaluating large language model powered clinical question-answering systems in healthcare, addressing the gap between theoretical evaluation frameworks and practical implementation guidance.

Materials and Methods

A five□dimension evaluation framework was developed to assess query comprehension and response helpfulness, correctness, completeness, and potential clinical harm. The framework was applied to evaluate ClinicalKey AI using queries drawn from user logs, benchmark datasets, and subject matter experts. Forty□one board□certified physicians and pharmacists were recruited to independently evaluate query–response pairs. An agreement protocol using the mode and modified Delphi method resolved disagreements.

Results

Of 633 queries, 614 (96.99%) produced evaluable responses, with subject matter experts completing evaluations of 426 query-response pairs. Results demonstrated high rates of response correctness (95.5%) and query comprehension (98.6%), with 94.4% of responses rated as helpful. Two responses (0.47%) received scores indicating potential clinical harm. Pairwise consensus occurred in 60.6% of evaluations, with remaining cases requiring third tie-breaker review.

Discussion

The framework demonstrated effectiveness in quantifying performance through comprehensive evaluation dimensions and structured scoring resolution methods. Key strengths included representative query sampling, standardized rating scales, and robust subject matter expert training. Challenges emerged in managing subjective assessments of open-ended responses and achieving consensus on potential harm classification.

Conclusion

This framework offers a reproducible methodology for evaluating healthcare generative artificial intelligence clinical question-answering systems, establishing foundational processes that can inform future efforts while supporting safe implementation in clinical settings.

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