RETRACTED: Analysis of 329,942 SARS-CoV-2 records retrieved from GISAID database

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1. Version published to 10.1016/j.compbiomed.2021.104981

   Dec 1, 2021
2. 

   ScreenIT

   Aug 10, 2021

   SciScore for 10.1101/2021.08.04.454929: (What is this?)

   Please note, not all rigor criteria are appropriate for all manuscripts.

   Table 1: Rigor

   Ethics	not detected.
   Sex as a biological variable	not detected.
   Randomization	not detected.
   Blinding	not detected.
   Power Analysis	not detected.

   Table 2: Resources

   Software and Algorithms
   Sentences	Resources
   Custom code for revealing insertions, deletions, and SNPs was used alongside the pairwise2 local tool (https://biopython.org/docs/1.78/api/Bio.pairwise2.html) from the BioPython library (Python version 3.7, BioPython version 1.78; https://biopython.org/).	Python suggested: (IPython, RRID:SCR_001658) BioPython suggested: (Biopython, RRID:SCR_007173)
   Genomic positions were retrieved from the UCSC genome browser (see Table 1).	UCSC genome browser suggested: (UCSC Genome Browser, RRID:SCR_005780)
   We used Pandas (version …

   SciScore for 10.1101/2021.08.04.454929: (What is this?)

   Please note, not all rigor criteria are appropriate for all manuscripts.

   Table 1: Rigor

   Ethics	not detected.
   Sex as a biological variable	not detected.
   Randomization	not detected.
   Blinding	not detected.
   Power Analysis	not detected.

   Table 2: Resources

   Software and Algorithms
   Sentences	Resources
   Custom code for revealing insertions, deletions, and SNPs was used alongside the pairwise2 local tool (https://biopython.org/docs/1.78/api/Bio.pairwise2.html) from the BioPython library (Python version 3.7, BioPython version 1.78; https://biopython.org/).	Python suggested: (IPython, RRID:SCR_001658) BioPython suggested: (Biopython, RRID:SCR_007173)
   Genomic positions were retrieved from the UCSC genome browser (see Table 1).	UCSC genome browser suggested: (UCSC Genome Browser, RRID:SCR_005780)
   We used Pandas (version 1.2; https://pandas.pydata.org/), Matplotlib (version 3.3; https://matplotlib.org/), and Seaborn (version 0.11; https://seaborn.pydata.org/installing.html) to visualize the data.	Matplotlib suggested: (MatPlotLib, RRID:SCR_008624)

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   Results from OddPub: We did not detect open data. We also did not detect open code. Researchers are encouraged to share open data when possible (see Nature blog).

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   Results from LimitationRecognizer: An explicit section about the limitations of the techniques employed in this study was not found. We encourage authors to address study limitations.

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   Results from TrialIdentifier: No clinical trial numbers were referenced.

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   Results from Barzooka: We did not find any issues relating to the usage of bar graphs.

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   Results from JetFighter: We did not find any issues relating to colormaps.

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   Results from rtransparent:

   • Thank you for including a conflict of interest statement. Authors are encouraged to include this statement when submitting to a journal.
   • Thank you for including a funding statement. Authors are encouraged to include this statement when submitting to a journal.
   • No protocol registration statement was detected.

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   Results from scite Reference Check: We found no unreliable references.

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   Read the original source
3. 

   Version published to 10.1101/2021.08.04.454929v1 on bioRxiv

   Aug 4, 2021