Exploring the coronavirus pandemic with the WashU Virus Genome Browser
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SciScore for 10.1101/2020.02.07.939124: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
NIH rigor criteria are not applicable to paper type.Table 2: Resources
Software and Algorithms Sentences Resources Reference sequences, additional strains, and gene annotations: Genomic sequences of all viral strains were downloaded as FASTA files from NCBI [Supplementary Table 1]. NCBIsuggested: (NCBI, RRID:SCR_006472)To generate the phylogenetic trees, we used the MAFFT program, employing the fast option to align individual strains of each viral genome to its reference [10, 11]. MAFFTsuggested: (MAFFT, RRID:SCR_011811)Phylogenetic trees were built using FastTree with the GTR model [12, 13]. FastTreesuggested: (FastTree, RRID:SCR_015501)Results from OddPub: Thank you for sharing your data.
Results from Li…SciScore for 10.1101/2020.02.07.939124: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
NIH rigor criteria are not applicable to paper type.Table 2: Resources
Software and Algorithms Sentences Resources Reference sequences, additional strains, and gene annotations: Genomic sequences of all viral strains were downloaded as FASTA files from NCBI [Supplementary Table 1]. NCBIsuggested: (NCBI, RRID:SCR_006472)To generate the phylogenetic trees, we used the MAFFT program, employing the fast option to align individual strains of each viral genome to its reference [10, 11]. MAFFTsuggested: (MAFFT, RRID:SCR_011811)Phylogenetic trees were built using FastTree with the GTR model [12, 13]. FastTreesuggested: (FastTree, RRID:SCR_015501)Results from OddPub: Thank you for sharing your data.
Results from LimitationRecognizer: An explicit section about the limitations of the techniques employed in this study was not found. We encourage authors to address study limitations.Results from TrialIdentifier: No clinical trial numbers were referenced.
Results from Barzooka: We did not find any issues relating to the usage of bar graphs.
Results from JetFighter: We did not find any issues relating to colormaps.
Results from rtransparent:- No conflict of interest statement was detected. If there are no conflicts, we encourage authors to explicit state so.
- Thank you for including a funding statement. Authors are encouraged to include this statement when submitting to a journal.
- No protocol registration statement was detected.
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