Pathogenic perspective of missense mutations of ORF3a protein of SARS-CoV-2
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SciScore for 10.1101/2020.08.04.236653: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
NIH rigor criteria are not applicable to paper type.Table 2: Resources
Software and Algorithms Sentences Resources Here we discuss about data followed by methods which are employed in this study. 2.1. Data: As on date 27th July, 2020, there were 7194 complete genomes of SARS-CoV2 available in the NCBI database and accordingly each genome contains one of the accessory proteins ORF3a and among them only 296 sequences are found to be distinct from each other. NCBIsuggested: (NCBI, RRID:SCR_006472)In this study we did clustering using Matlab by customizing the value of K and inputting the frequency of amino acid compositions over the ORF3a proteins. Matlabsuggested: (MATLAB, RRID:SCR_001622)Results from OddP…
SciScore for 10.1101/2020.08.04.236653: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
NIH rigor criteria are not applicable to paper type.Table 2: Resources
Software and Algorithms Sentences Resources Here we discuss about data followed by methods which are employed in this study. 2.1. Data: As on date 27th July, 2020, there were 7194 complete genomes of SARS-CoV2 available in the NCBI database and accordingly each genome contains one of the accessory proteins ORF3a and among them only 296 sequences are found to be distinct from each other. NCBIsuggested: (NCBI, RRID:SCR_006472)In this study we did clustering using Matlab by customizing the value of K and inputting the frequency of amino acid compositions over the ORF3a proteins. Matlabsuggested: (MATLAB, RRID:SCR_001622)Results from OddPub: We did not detect open data. We also did not detect open code. Researchers are encouraged to share open data when possible (see Nature blog).
Results from LimitationRecognizer: An explicit section about the limitations of the techniques employed in this study was not found. We encourage authors to address study limitations.Results from TrialIdentifier: No clinical trial numbers were referenced.
Results from Barzooka: We did not find any issues relating to the usage of bar graphs.
Results from JetFighter: We did not find any issues relating to colormaps.
Results from rtransparent:- Thank you for including a conflict of interest statement. Authors are encouraged to include this statement when submitting to a journal.
- No funding statement was detected.
- No protocol registration statement was detected.
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