Prediction of infectivity of SARS-CoV2: Mathematical model with analysis of docking simulation for spike proteins and angiotensin-converting enzyme 2
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SciScore for 10.1101/2022.03.30.486373: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
NIH rigor criteria are not applicable to paper type.Table 2: Resources
Software and Algorithms Sentences Resources Multiple sequence alignment for S gene (spike protein) of the SARS-CoV-2 variants, whose nucleotide sequences of each variant were obtained from NCBI, was analyzed by Clustal W program [18]. Clustal Wsuggested: (An Extended and Parallel version of Clustal, RRID:SCR_008620)Then FastTree [19] with default parameters provided phylogenetic tree and evolutionary distances between each mutant. FastTreesuggested: (FastTree, RRID:SCR_015501)Results from OddPub: We did not detect open data. We also did not detect open code. Researchers are encouraged to share open data when possible (see Nature blog).
SciScore for 10.1101/2022.03.30.486373: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
NIH rigor criteria are not applicable to paper type.Table 2: Resources
Software and Algorithms Sentences Resources Multiple sequence alignment for S gene (spike protein) of the SARS-CoV-2 variants, whose nucleotide sequences of each variant were obtained from NCBI, was analyzed by Clustal W program [18]. Clustal Wsuggested: (An Extended and Parallel version of Clustal, RRID:SCR_008620)Then FastTree [19] with default parameters provided phylogenetic tree and evolutionary distances between each mutant. FastTreesuggested: (FastTree, RRID:SCR_015501)Results from OddPub: We did not detect open data. We also did not detect open code. Researchers are encouraged to share open data when possible (see Nature blog).
Results from LimitationRecognizer: An explicit section about the limitations of the techniques employed in this study was not found. We encourage authors to address study limitations.Results from TrialIdentifier: No clinical trial numbers were referenced.
Results from Barzooka: We did not find any issues relating to the usage of bar graphs.
Results from JetFighter: We did not find any issues relating to colormaps.
Results from rtransparent:- Thank you for including a conflict of interest statement. Authors are encouraged to include this statement when submitting to a journal.
- Thank you for including a funding statement. Authors are encouraged to include this statement when submitting to a journal.
- No protocol registration statement was detected.
Results from scite Reference Check: We found no unreliable references.
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