Host range projection of SARS-CoV-2: South Asia perspective
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SciScore for 10.1101/2020.09.30.320242: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
NIH rigor criteria are not applicable to paper type.Table 2: Resources
Software and Algorithms Sentences Resources Multiple comparisons were conducted using ClustalW multiple sequence alignment program incorporated in MEGA□X. ClustalWsuggested: (ClustalW, RRID:SCR_017277)MEGA□Xsuggested: NoneHomology-based structure simulation of ACE2□RBD complex: The recently solved crystal structure of SARS-CoV-2 S RBD12 bound to the cell receptor ACE2 was used as template (PDB: 6M0J) for homology modeling to simulate the interaction interfaces of SARS-COV-2 S RBD and ACE2 of human, pangolin, intermediate horseshoe bat, cow, goat, cat and dog using MODELLER28 incorporated in Chimera software version 1.14. Chimerasugges…SciScore for 10.1101/2020.09.30.320242: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
NIH rigor criteria are not applicable to paper type.Table 2: Resources
Software and Algorithms Sentences Resources Multiple comparisons were conducted using ClustalW multiple sequence alignment program incorporated in MEGA□X. ClustalWsuggested: (ClustalW, RRID:SCR_017277)MEGA□Xsuggested: NoneHomology-based structure simulation of ACE2□RBD complex: The recently solved crystal structure of SARS-CoV-2 S RBD12 bound to the cell receptor ACE2 was used as template (PDB: 6M0J) for homology modeling to simulate the interaction interfaces of SARS-COV-2 S RBD and ACE2 of human, pangolin, intermediate horseshoe bat, cow, goat, cat and dog using MODELLER28 incorporated in Chimera software version 1.14. Chimerasuggested: (Chimera, RRID:SCR_002959)Results from OddPub: We did not detect open data. We also did not detect open code. Researchers are encouraged to share open data when possible (see Nature blog).
Results from LimitationRecognizer: An explicit section about the limitations of the techniques employed in this study was not found. We encourage authors to address study limitations.Results from TrialIdentifier: No clinical trial numbers were referenced.
Results from Barzooka: We did not find any issues relating to the usage of bar graphs.
Results from JetFighter: We did not find any issues relating to colormaps.
Results from rtransparent:- Thank you for including a conflict of interest statement. Authors are encouraged to include this statement when submitting to a journal.
- No funding statement was detected.
- No protocol registration statement was detected.
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