A graph-based approach identifies dynamic H-bond communication networks in spike protein S of SARS-CoV-2

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  1. SciScore for 10.1101/2020.06.23.164947: (What is this?)

    Please note, not all rigor criteria are appropriate for all manuscripts.

    Table 1: Rigor

    NIH rigor criteria are not applicable to paper type.

    Table 2: Resources

    Software and Algorithms
    SentencesResources
    The resulting sequences were realigned with MAFFT using SARS-CoV-2 as reference.
    MAFFT
    suggested: (MAFFT, RRID:SCR_011811)
    Set-D contains human sequences of ACE2 from the 1000 human Genome project (Auton and Brooks, 2015); for this set, we used the Ensembl project (Hunt et al., 2018) and extracted the different protein haplotypes existing in the 1000 Genome Project for ACE2 using the GRCh38 human genome assembly as reference.
    Ensembl
    suggested: (Ensembl, RRID:SCR_002344)
    Computations of the electrostatic potential surface: were performed with the Adaptive Poisson Boltzmann Solver, APBS (Baker …