SARS-CoV-2 leverages airway epithelial protective mechanism for viral infection
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SciScore for 10.1101/2022.01.29.478335: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
NIH rigor criteria are not applicable to paper type.Table 2: Resources
Software and Algorithms Sentences Resources To further parcellate ciliated subtypes, all ciliated cells (21,510 cells) were subset and re-clustered following the same standard Seurat pipeline as above. Seuratsuggested: (SEURAT, RRID:SCR_007322)All heatmaps were generated using ComplexHeatmap (Gu et al., 2016) and unity normalized by row to represent greatest and least expressive column condition, while preserving intermediate variation. ComplexHeatmapsuggested: (ComplexHeatmap, RRID:SCR_017270)The R package ggplot2 (Wickham, 2016) was then used to create plots of longitudinal cell-cell signaling trends over time for both sending and … SciScore for 10.1101/2022.01.29.478335: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
NIH rigor criteria are not applicable to paper type.Table 2: Resources
Software and Algorithms Sentences Resources To further parcellate ciliated subtypes, all ciliated cells (21,510 cells) were subset and re-clustered following the same standard Seurat pipeline as above. Seuratsuggested: (SEURAT, RRID:SCR_007322)All heatmaps were generated using ComplexHeatmap (Gu et al., 2016) and unity normalized by row to represent greatest and least expressive column condition, while preserving intermediate variation. ComplexHeatmapsuggested: (ComplexHeatmap, RRID:SCR_017270)The R package ggplot2 (Wickham, 2016) was then used to create plots of longitudinal cell-cell signaling trends over time for both sending and receiving populations. ggplot2suggested: (ggplot2, RRID:SCR_014601)Results from OddPub: We did not detect open data. We also did not detect open code. Researchers are encouraged to share open data when possible (see Nature blog).
Results from LimitationRecognizer: An explicit section about the limitations of the techniques employed in this study was not found. We encourage authors to address study limitations.Results from TrialIdentifier: No clinical trial numbers were referenced.
Results from Barzooka: We did not find any issues relating to the usage of bar graphs.
Results from JetFighter: We did not find any issues relating to colormaps.
Results from rtransparent:- Thank you for including a conflict of interest statement. Authors are encouraged to include this statement when submitting to a journal.
- Thank you for including a funding statement. Authors are encouraged to include this statement when submitting to a journal.
- No protocol registration statement was detected.
Results from scite Reference Check: We found no unreliable references.
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