Mutational signatures and heterogeneous host response revealed via large-scale characterization of SARS-CoV-2 genomic diversity

  1. Alex Graudenzi
  2. Davide Maspero
  3. Fabrizio Angaroni
  4. Rocco Piazza
  5. Daniele Ramazzotti

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Abstract

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  1. Version published to 10.1016/j.isci.2021.102116
  2. Version published to 10.1101/2020.07.06.189944v2 on bioRxiv
  3. ScreenIT

    SciScore for 10.1101/2020.07.06.189944: (What is this?)

    Please note, not all rigor criteria are appropriate for all manuscripts.

    Table 1: Rigor

    NIH rigor criteria are not applicable to paper type.

    Table 2: Resources

    Software and Algorithms
    SentencesResources
    , BEAST 2 (Bouckaert et al., 2019) and MrBayes (Ronquist et al., 2012).
    MrBayes
    suggested: (MrBayes, RRID:SCR_012067)

    Results from OddPub: Thank you for sharing your code and data.

    Results from LimitationRecognizer: We detected the following sentences addressing limitations in the study:
    Limitations of the Study:

    Results from TrialIdentifier: No clinical trial numbers were referenced.

    Results from Barzooka: We did not find any issues relating to the usage of bar graphs.

    Results from JetFighter: We did not find any issues relating to colormaps.

    Results from rtransparent:
    • Thank you for including a conflict of interest statement. Authors are encouraged to include this statement when submitting to a journal.
    • Thank you for including a funding statement. Authors are encouraged to include this statement when submitting to a journal.
    • No protocol registration statement was detected.

    About SciScore

    SciScore is an automated tool that is designed to assist expert reviewers by finding and presenting formulaic information scattered throughout a paper in a standard, easy to digest format. SciScore checks for the presence and correctness of RRIDs (research resource identifiers), and for rigor criteria such as sex and investigator blinding. For details on the theoretical underpinning of rigor criteria and the tools shown here, including references cited, please follow this link.

  4. Version published to 10.1101/2020.07.06.189944v1 on bioRxiv