Analysis of single nucleotide polymorphisms between 2019-nCoV genomes and its impact on codon usage
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SciScore for 10.1101/2020.08.05.237404: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
Institutional Review Board Statement not detected. Randomization not detected. Blinding not detected. Power Analysis not detected. Sex as a biological variable not detected. Table 2: Resources
Software and Algorithms Sentences Resources ClustalW software was used for sequence alignment (Guo and Sun, 2000). ClustalWsuggested: (ClustalW, RRID:SCR_017277)The aligned sequences were used to create phylogenetic tree using MEGA X software (Kumar et al., 2018). MEGA Xsuggested: NoneSequence handling and data processing were carried out in Bioedit software (Hall et al., 2011) Bioeditsuggested: (BioEdit, RRID:SCR_007361)AutoDock 4.2 software was used to dock the protein structures with their potential ligands (Rizvi et al., … SciScore for 10.1101/2020.08.05.237404: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
Institutional Review Board Statement not detected. Randomization not detected. Blinding not detected. Power Analysis not detected. Sex as a biological variable not detected. Table 2: Resources
Software and Algorithms Sentences Resources ClustalW software was used for sequence alignment (Guo and Sun, 2000). ClustalWsuggested: (ClustalW, RRID:SCR_017277)The aligned sequences were used to create phylogenetic tree using MEGA X software (Kumar et al., 2018). MEGA Xsuggested: NoneSequence handling and data processing were carried out in Bioedit software (Hall et al., 2011) Bioeditsuggested: (BioEdit, RRID:SCR_007361)AutoDock 4.2 software was used to dock the protein structures with their potential ligands (Rizvi et al., 2013). AutoDocksuggested: (AutoDock, RRID:SCR_012746)Results from OddPub: We did not detect open data. We also did not detect open code. Researchers are encouraged to share open data when possible (see Nature blog).
Results from LimitationRecognizer: An explicit section about the limitations of the techniques employed in this study was not found. We encourage authors to address study limitations.Results from TrialIdentifier: No clinical trial numbers were referenced.
Results from Barzooka: We did not find any issues relating to the usage of bar graphs.
Results from JetFighter: We did not find any issues relating to colormaps.
Results from rtransparent:- Thank you for including a conflict of interest statement. Authors are encouraged to include this statement when submitting to a journal.
- No funding statement was detected.
- No protocol registration statement was detected.
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