Structural Basis for Helicase-Polymerase Coupling in the SARS-CoV-2 Replication-Transcription Complex
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SciScore for 10.1101/2020.07.08.194084: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
Institutional Review Board Statement not detected. Randomization not detected. Blinding not detected. Power Analysis not detected. Sex as a biological variable not detected. Cell Line Authentication not detected. Table 2: Resources
Experimental Models: Cell Lines Sentences Resources Nsp12. SARS-CoV-2 RNA was derived from the supernatant of propagated Vero E6 cells and provided by B.R. tenOever (Blanco-Melo et al., 2020). Vero E6suggested: NoneSoftware and Algorithms Sentences Resources Protein cloning: All constructs were verified by sequencing (GeneWiz). GeneWizsuggested: (GENEWIZ, RRID:SCR_003177)For data processing, the acquired MS spectra were visualized using Thermo Xcalibur Qual Browser (v. 4.2.47) Thermo …SciScore for 10.1101/2020.07.08.194084: (What is this?)
Please note, not all rigor criteria are appropriate for all manuscripts.
Table 1: Rigor
Institutional Review Board Statement not detected. Randomization not detected. Blinding not detected. Power Analysis not detected. Sex as a biological variable not detected. Cell Line Authentication not detected. Table 2: Resources
Experimental Models: Cell Lines Sentences Resources Nsp12. SARS-CoV-2 RNA was derived from the supernatant of propagated Vero E6 cells and provided by B.R. tenOever (Blanco-Melo et al., 2020). Vero E6suggested: NoneSoftware and Algorithms Sentences Resources Protein cloning: All constructs were verified by sequencing (GeneWiz). GeneWizsuggested: (GENEWIZ, RRID:SCR_003177)For data processing, the acquired MS spectra were visualized using Thermo Xcalibur Qual Browser (v. 4.2.47) Thermo Xcalibur Qual Browsersuggested: NoneDose-fractionated movies were gain-normalized, drift-corrected, summed, and dose-weighted using MotionCor2 (Zheng et al., 2017). MotionCor2suggested: (MotionCor2, RRID:SCR_016499)The contrast transfer function (CTF) was estimated for each summed image using the Patch CTF module in cryoSPARC v2.15.0 (Punjani et al., 2017). cryoSPARCsuggested: (cryoSPARC, RRID:SCR_016501)Models were inspected and modified in Coot (Emsley and Cowtan, 2004). Cootsuggested: (Coot, RRID:SCR_014222)Results from OddPub: Thank you for sharing your data.
Results from LimitationRecognizer: An explicit section about the limitations of the techniques employed in this study was not found. We encourage authors to address study limitations.Results from TrialIdentifier: No clinical trial numbers were referenced.
Results from Barzooka: We did not find any issues relating to the usage of bar graphs.
Results from JetFighter: Please consider improving the rainbow (“jet”) colormap(s) used on pages 33, 35, 37, 39 and 12. At least one figure is not accessible to readers with colorblindness and/or is not true to the data, i.e. not perceptually uniform.
Results from rtransparent:- Thank you for including a conflict of interest statement. Authors are encouraged to include this statement when submitting to a journal.
- Thank you for including a funding statement. Authors are encouraged to include this statement when submitting to a journal.
- No protocol registration statement was detected.
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