Single cell RNA sequencing of 13 human tissues identify cell types and receptors of human coronaviruses

Article activity feed

1. 

   ScreenIT

   Jun 4, 2020

   SciScore for 10.1101/2020.02.16.951913: (What is this?)

   Please note, not all rigor criteria are appropriate for all manuscripts.

   Table 1: Rigor

   NIH rigor criteria are not applicable to paper type.

   Table 2: Resources

   Software and Algorithms
   Sentences	Resources
   Data collection: The gene raw counts or normalized gene expression matrix for each single cell were downloaded from GEO (https://www.ncbi.nlm.nih.gov/geo/) or Human Cell Atlas (https://www.humancellatlas.org) database (Table S1).	https://www.ncbi.nlm.nih.gov/geo/ suggested: (Gene Expression Omnibus (GEO, RRID:SCR_005012) https://www.humancellatlas.org suggested: (Human Cell Atlas, RRID:SCR_016530)
   It was implemented by ‘‘FindVariableGenes’’ function in the Seurat package.	Seurat suggested: (SEURAT, RRID:SCR_007322)
   Cell-cell interaction analysis: We conducted cell-cell interaction analysis …

   SciScore for 10.1101/2020.02.16.951913: (What is this?)

   Please note, not all rigor criteria are appropriate for all manuscripts.

   Table 1: Rigor

   NIH rigor criteria are not applicable to paper type.

   Table 2: Resources

   Software and Algorithms
   Sentences	Resources
   Data collection: The gene raw counts or normalized gene expression matrix for each single cell were downloaded from GEO (https://www.ncbi.nlm.nih.gov/geo/) or Human Cell Atlas (https://www.humancellatlas.org) database (Table S1).	https://www.ncbi.nlm.nih.gov/geo/ suggested: (Gene Expression Omnibus (GEO, RRID:SCR_005012) https://www.humancellatlas.org suggested: (Human Cell Atlas, RRID:SCR_016530)
   It was implemented by ‘‘FindVariableGenes’’ function in the Seurat package.	Seurat suggested: (SEURAT, RRID:SCR_007322)
   Cell-cell interaction analysis: We conducted cell-cell interaction analysis utilizing cellphonedb function curated by CellPhoneDB database[24].	CellPhoneDB suggested: (CellPhoneDB, RRID:SCR_017054)

   ---

   Results from OddPub: Thank you for sharing your data.

   ---

   Results from LimitationRecognizer: An explicit section about the limitations of the techniques employed in this study was not found. We encourage authors to address study limitations.

   ---

   Results from TrialIdentifier: No clinical trial numbers were referenced.

   ---

   Results from Barzooka: We did not find any issues relating to the usage of bar graphs.

   ---

   Results from JetFighter: We did not find any issues relating to colormaps.

   ---

   Results from rtransparent:

   • Thank you for including a conflict of interest statement. Authors are encouraged to include this statement when submitting to a journal.
   • No funding statement was detected.
   • No protocol registration statement was detected.

   ---

   Read the original source
2. Version published to 10.1016/j.bbrc.2020.03.044

   May 1, 2020
3. 

   Version published to 10.1101/2020.02.16.951913v1 on bioRxiv

   Feb 21, 2020